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X-ray Structures

Important note for CSGID staff! Before depositing your structure, make sure it follows the guidelines here " PDB deposit guidelines" and here "Crystal structure quality metrics for PDB deposition."

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Page 5 of 36, showing 20 records  out of 710 total, starting on record 81 structures.
Click on the title of a structure below to see more information about that structure.

Target IDP90922          community request

Title: 1.62 Angstrom Crystal Structure of the Salmonella enterica 3-Dehydroquinate Dehydratase (aroD) E86A Mutant in Complex with Dehydroshikimate (Crystal Form #1)
Authors: S.H.Light, G.Minasov, M.-E.Duban, L.Shuvalova, K.Kwon, A.Lavie, W.F.Anderson
PDB 4GUG (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: (4s,5r)-4,5-dihydroxy-3-oxocyclohex-1-ene-1-carboxylic acid
Other ligands: Chloride
R: 17.5%
Rfree: 20.8%
Resolution: 1.62Å
Deposited: 2012-08-30
Released:
Title: 1.5 Angstrom Crystal Structure of the Salmonella enterica 3-Dehydroquinate Dehydratase (aroD) E86A Mutant
Authors: S.H.Light, G.Minasov, M.-E.Duban, L.Shuvalova, K.Kwon, A.Lavie, W.F.Anderson
PDB 4GUF (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: Chloride
R: 16.8%
Rfree: 19.1%
Resolution: 1.5Å
Deposited: 2012-08-30
Released:
Title: 1.78 Angstrom Crystal Structure of the Salmonella enterica 3-Dehydroquinate Dehydratase (aroD) in Complex with Quinate
Authors: S.H.Light, G.Minasov, M.-E.Duban, L.Shuvalova, K.Kwon, A.Lavie, W.F.Anderson
PDB 4GUI (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: (1s,3r,4s,5r)-1,3,4,5-tetrahydroxycyclohexanecarboxylic acid
Other ligands: nickel (II) ion
R: 16.1%
Rfree: 18.8%
Resolution: 1.78Å
Deposited: 2012-08-30
Released:
Title: 1.50 Angstrom Crystal Structure of the Salmonella enterica 3-Dehydroquinate Dehydratase (aroD) in Complex with Shikimate
Authors: S.H.Light, G.Minasov, M.-E.Duban, L.Shuvalova, K.Kwon, A.Lavie, W.F.Anderson
PDB 4GUJ (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: (3r,4s,5r)-3,4,5-trihydroxycyclohex-1-ene-1-carboxylic acid
Other ligands: Zinc ion
R: 15.7%
Rfree: 18.2%
Resolution: 1.5Å
Deposited: 2012-08-30
Released:

Target IDP91963          community request

Title: 1.0 Angstrom resolution crystal structure of the branched-chain amino acid transporter substrate binding protein LivJ from Streptococcus pneumoniae str. Canada MDR_19A in complex with Isoleucine
Authors: Halavaty, A.S. Kudritska, M. Wawrzak, Z. Stogios, P.J. Yim, V. Savchenko, A. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4GNR (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 12.7%
Rfree: 14.7%
Resolution: 1Å
Deposited: 2012-08-17
Released: 2012-09-05

Target IDP91191          community request

Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NA-PP1
Authors: P.J.Stogios, E.Evdokimova, Z.Wawrzak, G.Minasov, O.Egorova, R.Di Leo, T.Shakya, P.Spanogiannopoulos, N.Todorovic, A.Capretta, G.D.Wright, A.Savchenko, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4GKH (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , 1-tert-butyl-3-(naphthalen-1-yl)-1h-pyrazolo[3,4-d]pyri midin-4-amine, Chloride, Sodium Ion
R: 16.7%
Rfree: 21.6%
Resolution: 1.86Å
Deposited: 2012-08-11
Released: 2012-09-06
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NM-PP1
Authors: P.J.Stogios, E.Evdokimova, Z.Wawrzak, G.Minasov, O.Egorova, R.Di Leo, T.Shakya, P.Spanogiannopoulos, N.Todorovic, A.Capretta, G.D.Wright, A.Savchenko, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4GKI (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , 1-tert-butyl-3-(naphthalen-1-ylmethyl)-1h-pyrazolo[3,4-d]pyrimidin-4-amine, Chloride, Sodium Ion
R: 16.8%
Rfree: 21.6%
Resolution: 1.88Å
Deposited: 2012-08-11
Released: 2012-09-06

Target IDP90547          community request

Title: Crystal structure of 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (hisA)
Authors: B.Nocek, M.Gu, K.Kwon, W.F.Anderson, A.Joachimiak, Center for Structural Genomics of Infectious Diseases(CSGID)
PDB 4GJ1 (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 18.3%
Rfree: 22.9%
Resolution: 2.15Å
Deposited: 2012-08-09
Released: 2012-09-11

Target IDP91375          community request

Title: 1.75 Angstrom Crystal Structure of Transcriptional Regulator ftom Vibrio vulnificus.
Authors: Minasov, G. Shuvalova, L. Dubrovska, I. Winsor, J. Grimshaw, S. Papazisi, L. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4GHJ (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 18.4%
Rfree: 22.3%
Resolution: 1.75Å
Deposited: 2012-08-07
Released: 2012-08-15

Target IDP90922          community request

Title: 1.8 Angstrom Crystal Structure of the 3-Dehydroquinate Dehydratase (aroD) from Salmonella typhimurium LT2 with Nickel Bound at Active Site
Authors: S.H.Light,G.Minasov,L.Shuvalova,K.Kwon,A.Lavie,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)
PDB 4GFS (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: nickel (II) ion
Other ligands: succinic acid
R: 20.1%
Rfree: 24.9%
Resolution: 1.8Å
Deposited: 2012-08-03
Released:

Target IDP91398          community request

Title: Potassium transporter peripheral membrane component (trkA) from Vibrio vulnificus
Authors: E.V.Filippova, Z.Wawrzak, T.Skarina, O.Onopriyenko, A.Edwards, A.Savchenko, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4G65 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: Sulfate
Other ligands: Chloride, tetraethylene glycol
R: 18.1%
Rfree: 22.8%
Resolution: 2.09Å
Deposited: 2012-07-18
Released: 2012-08-15

Target IDP91191          community request

Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP1
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEV (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , 1-ter-butyl-3-p-tolyl-1h-pyrazolo[3,4-d]pyrimidin-4-yla mine, Sodium Ion
R: 15.4%
Rfree: 20.4%
Resolution: 1.89Å
Deposited: 2012-05-30
Released: 2012-06-20
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor anthrapyrazolone SP600125
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEU (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: , 2,6-dihydroanthra/1,9-cd/pyrazol-6-one, kanamycin a
R: 16.3%
Rfree: 21.5%
Resolution: 2.37Å
Deposited: 2012-05-30
Released: 2012-06-20
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor tyrphostin AG1478
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEX (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , Sodium Ion
R: 18.7%
Rfree: 24%
Resolution: 2.71Å
Deposited: 2012-05-30
Released: 2012-06-20
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP2
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEW (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , 1-tert-butyl-3-(4-chloro-phenyl)-1h-pyrazolo[3,4-d]pyri midin-4-ylamine, Chloride, Sodium Ion
R: 16%
Rfree: 21.6%
Resolution: 1.98Å
Deposited: 2012-05-30
Released: 2012-06-20

Target IDP91095          community request

Title: 1.9 Angstrom Crystal Structure of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsB) from Acinetobacter baumannii without His-Tag Bound to the Active Site.
Authors: Minasov, G. Halavaty, A. Shuvalova, L. Dubrovska, I. Winsor, J. Papazisi, L. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4FCU (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 19%
Rfree: 24.2%
Resolution: 1.9Å
Deposited: 2012-05-25
Released:

Target IDP90278          community request

Title: 2.35 Angstrom Crystal Structure of Conserved Hypothetical Protein from Toxoplasma gondii ME49.
Authors: G.Minasov, J.Ruan, Z.Wawrzak, L.Shuvalova, H.Ngo, L.Knoll, K.Milligan-Myhre, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FBD (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 20.5%
Rfree: 25.8%
Resolution: 2.35Å
Deposited: 2012-05-22
Released: 2012-06-06

Target IDP91774          community request

Title: Crystal Structure of Vancomycin Resistance D,D-dipeptidase VanXYg
Authors: Stogios PJ, Wawrzak Z, Evdokimova E, Minasov G, Egorova O, Di Leo R, Kudritska M, Yim V, Meziane-Cherif D, Courvalin P, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4F78 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: Zinc ion
Other ligands: , Chloride, glycerol, Sulfate
R: 15.5%
Rfree: 18.6%
Resolution: 1.95Å
Deposited: 2012-05-15
Released: 2012-05-23

Target IDP91868          community request

Title: Crystal structure of aminoglycoside antibiotic 6'-N-acetyltransferase AAC(6')-Ig from Acinetobacter haemolyticus, apo
Authors: Stogios PJ, Evdokimova E, Dong A, Minasov G, Yim V, Courvalin P, Savchenko A, Anderson Wf, Center For Structural Genomics Of Infectious Diseases (CSGID)
PDB 4F0Y (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: Chloride, glycerol, magnesium
R: 18.4%
Rfree: 24%
Resolution: 2.56Å
Deposited: 2012-05-05
Released: 2012-05-16

Target IDP91761          community request

Title: CRYSTAL structure of MccF-like protein in the complex with AMP from Streptococcus Pneumoniae
Authors: B.Nocek, W.F.Anderson, A.Joachimiak, Center for Structural Genomics of Infectious Diseases(CSGID)
PDB 4EYS (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: adenosine monophosphate
Other ligands: , Sulfate
R: 17%
Rfree: 19.8%
Resolution: 1.58Å
Deposited: 2012-05-01
Released: 2012-06-13
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