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X-ray Structures

Important note for CSGID staff! Before depositing your structure, make sure it follows the guidelines here " PDB deposit guidelines" and here "Crystal structure quality metrics for PDB deposition."

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Page 5 of 35, showing 20 records  out of 693 total, starting on record 81 structures.
Click on the title of a structure below to see more information about that structure.

Target IDP91191          community request

Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NM-PP1
Authors: P.J.Stogios, E.Evdokimova, Z.Wawrzak, G.Minasov, O.Egorova, R.Di Leo, T.Shakya, P.Spanogiannopoulos, N.Todorovic, A.Capretta, G.D.Wright, A.Savchenko, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4GKI (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , , 1-tert-butyl-3-(naphthalen-1-ylmethyl)-1h-pyrazolo[3,4-d]pyrimidin-4-amine, chloride ion
R: 16.8%
Rfree: 21.6%
Resolution: 1.88Å
Deposited: 2012-08-11
Released: 2012-09-06

Target IDP90547          community request

Title: Crystal structure of 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase (hisA)
Authors: B.Nocek, M.Gu, K.Kwon, W.F.Anderson, A.Joachimiak, Center for Structural Genomics of Infectious Diseases(CSGID)
PDB 4GJ1 (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 18.3%
Rfree: 22.9%
Resolution: 2.15Å
Deposited: 2012-08-09
Released: 2012-09-11

Target IDP91375          community request

Title: 1.75 Angstrom Crystal Structure of Transcriptional Regulator ftom Vibrio vulnificus.
Authors: Minasov, G. Shuvalova, L. Dubrovska, I. Winsor, J. Grimshaw, S. Papazisi, L. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4GHJ (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 18.4%
Rfree: 22.3%
Resolution: 1.75Å
Deposited: 2012-08-07
Released: 2012-08-15

Target IDP90922          community request

Title: 1.8 Angstrom Crystal Structure of the 3-Dehydroquinate Dehydratase (aroD) from Salmonella typhimurium LT2 with Nickel Bound at Active Site
Authors: S.H.Light,G.Minasov,L.Shuvalova,K.Kwon,A.Lavie,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)
PDB 4GFS (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: nickel (II) ion
Other ligands: succinic acid
R: 20.1%
Rfree: 24.9%
Resolution: 1.8Å
Deposited: 2012-08-03
Released:

Target IDP91398          community request

Title: Potassium transporter peripheral membrane component (trkA) from Vibrio vulnificus
Authors: E.V.Filippova, Z.Wawrzak, T.Skarina, O.Onopriyenko, A.Edwards, A.Savchenko, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4G65 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: sulfate ion
Other ligands: , chloride ion
R: 18.1%
Rfree: 22.8%
Resolution: 2.09Å
Deposited: 2012-07-18
Released: 2012-08-15

Target IDP91191          community request

Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor tyrphostin AG1478
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEX (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , ,
R: 18.7%
Rfree: 24%
Resolution: 2.71Å
Deposited: 2012-05-30
Released: 2012-06-20
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP1
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEV (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , 1-ter-butyl-3-p-tolyl-1h-pyrazolo[3,4-d]pyrimidin-4-yla mine
R: 15.4%
Rfree: 20.4%
Resolution: 1.89Å
Deposited: 2012-05-30
Released: 2012-06-20
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP2
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEW (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: kanamycin a
Other ligands: , , , 1-tert-butyl-3-(4-chloro-phenyl)-1h-pyrazolo[3,4-d]pyri midin-4-ylamine, chloride ion
R: 16%
Rfree: 21.6%
Resolution: 1.98Å
Deposited: 2012-05-30
Released: 2012-06-20
Title: Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor anthrapyrazolone SP600125
Authors: Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FEU (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: , 2,6-dihydroanthra/1,9-cd/pyrazol-6-one, kanamycin a
R: 16.3%
Rfree: 21.5%
Resolution: 2.37Å
Deposited: 2012-05-30
Released: 2012-06-20

Target IDP91095          community request

Title: 1.9 Angstrom Crystal Structure of 3-deoxy-manno-octulosonate Cytidylyltransferase (kdsB) from Acinetobacter baumannii without His-Tag Bound to the Active Site.
Authors: Minasov, G. Halavaty, A. Shuvalova, L. Dubrovska, I. Winsor, J. Papazisi, L. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4FCU (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 19%
Rfree: 24.2%
Resolution: 1.9Å
Deposited: 2012-05-25
Released:

Target IDP90278          community request

Title: 2.35 Angstrom Crystal Structure of Conserved Hypothetical Protein from Toxoplasma gondii ME49.
Authors: G.Minasov, J.Ruan, Z.Wawrzak, L.Shuvalova, H.Ngo, L.Knoll, K.Milligan-Myhre, W.F.Anderson, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4FBD (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 20.5%
Rfree: 25.8%
Resolution: 2.35Å
Deposited: 2012-05-22
Released: 2012-06-06

Target IDP91774          community request

Title: Crystal Structure of Vancomycin Resistance D,D-dipeptidase VanXYg
Authors: Stogios PJ, Wawrzak Z, Evdokimova E, Minasov G, Egorova O, Di Leo R, Kudritska M, Yim V, Meziane-Cherif D, Courvalin P, Savchenko A, Anderson WF, Center for Structural Genomics of Infectious Diseases (CSGID)
PDB 4F78 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with:
Other ligands: , chloride ion, glycerol, sulfate ion
R: 15.5%
Rfree: 18.6%
Resolution: 1.95Å
Deposited: 2012-05-15
Released: 2012-05-23

Target IDP91868          community request

Title: Crystal structure of aminoglycoside antibiotic 6'-N-acetyltransferase AAC(6')-Ig from Acinetobacter haemolyticus, apo
Authors: Stogios PJ, Evdokimova E, Dong A, Minasov G, Yim V, Courvalin P, Savchenko A, Anderson Wf, Center For Structural Genomics Of Infectious Diseases (CSGID)
PDB 4F0Y (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: chloride ion, glycerol, magnesium
R: 18.4%
Rfree: 24%
Resolution: 2.56Å
Deposited: 2012-05-05
Released: 2012-05-16

Target IDP91761          community request

Title: CRYSTAL structure of MccF-like protein in the complex with AMP from Streptococcus Pneumoniae
Authors: B.Nocek, W.F.Anderson, A.Joachimiak, Center for Structural Genomics of Infectious Diseases(CSGID)
PDB 4EYS (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: adenosine monophosphate
Other ligands: , sulfate ion
R: 17%
Rfree: 19.8%
Resolution: 1.58Å
Deposited: 2012-05-01
Released: 2012-06-13

Target IDP91988          community request

Title: Crystal structure of putative phosphate ABC transporter, periplasmic phosphate-binding protein PstS 1 (PBP1) from Streptococcus pneumoniae Canada MDR_19A
Authors: Stogios PJ, Wawrzak Z, Kudritska M, Minasov G, Yim V, Savchenko A, Anderson WF, Center For Structural Genomics Of Infectious Diseases (CSGID)
PDB 4EXL (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: chloride ion, magnesium
R: 16.6%
Rfree: 21.1%
Resolution: 1.7Å
Deposited: 2012-04-30
Released: 2012-05-30

Target IDP90949          community request

Title: Human p38 alpha MAPK in complex with a pyridazine based inhibitor.
Authors: Grum-Tokars, V., Minasov, G., Roy, S., Schavocky, J., Winsor, J, Watterson, D.M., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4EWQ (PDBSUM) (Profunc) (GPSS) (MMDB)
Other ligands: , , , , 4-[3-(4-fluorophenyl)-1h-pyrazol-4-yl]pyridine, beta-mercaptoethanol, chloride ion, glycerol
R: 18.2%
Rfree: 22.9%
Resolution: 2.1Å
Deposited: 2012-04-27
Released:

Target IDP91959          community request

Title: 1.5 Angstrom crystal structure of soluble domain of membrane-anchored thioredoxin family protein from Streptococcus pneumoniae strain Canada MDR_19A
Authors: Z.Wawrzak,P.J. Stogios,G.Minasov,M.Kudritska,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (CSGID)
PDB 4EVM (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 17%
Rfree: 19.8%
Resolution: 1.51Å
Deposited: 2012-04-26
Released: 2012-05-09

Target IDP91868          community request

Title: Crystal structure of aminoglycoside antibiotic 6'-N-acetyltransferase AAC(6')-Ig from Acinetobacter haemolyticus in complex with tobramycin
Authors: P.J.Stogios,E.Evdokimova,G.Minasov,V.Yim,P.Courvalin,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (CSGID)
PDB 4EVY (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: tobramycin
Other ligands: chloride ion, Potassium
R: 16.9%
Rfree: 21.3%
Resolution: 1.77Å
Deposited: 2012-04-26
Released: 2012-05-09

Target IDP91511          community request

Title: 1.55 Angstrom Crystal Structure of the Four Helical Bundle Membrane Localization Domain (4HBM) of the Vibrio vulnificus MARTX Effector Domain DUF5.
Authors: Minasov, G. Wawrzak, Z. Geissler, B. Shuvalova, L. Dubrovska, I. Winsor, J. Satchell, K.J. Anderson, W.F. Center for Structural Genomics of Infectious Diseases (CSGID).
PDB 4ERR (PDBSUM) (Profunc) (GPSS) (MMDB)
R: 17%
Rfree: 21.5%
Resolution: 1.55Å
Deposited: 2012-04-20
Released: 2012-05-02

Target IDP91961          community request

Title: 1.4 Angstrom Crystal Structure of Putative ABC Transporter Substrate-Binding Protein from Streptococcus pneumoniae strain Canada MDR_19A in Complex with Glutathione.
Authors: G.Minasov,Z.Wawrzak,P.J.Stogios,S.H.Light,M.Kudritska,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)
PDB 4EQ9 (PDBSUM) (Profunc) (GPSS) (MMDB)
Complexed with: glutathione
R: 16.9%
Rfree: 19%
Resolution: 1.4Å
Deposited: 2012-04-18
Released:
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