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Structure of IDP90915

Crystal structure of 4-hydroxythreonine-4-phosphate dehydrogenase from Yersinia pestis CO92

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CSGID target
IDP90915 
PDB Id
3LXY (NCBI MMDB) 
Authors
B. Nocek, N. Maltseva, K. Kwon, A. Joachimiak, W. Anderson. 
Responsible person
Boguslaw Nocek 
Responsible lab
Argonne National Laboratory 
Deposition Date
Feb 25, 2010 
Release Date
Mar 09, 2010 

Annotation

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    Ni unknown biological
    SUC sucrose crystallization
    SO4 sulfate ion

    Structure information

    View structure information | Edit structure information (upload a PDB file)

    Unit cell parameters

    Space Group
    C 2 2 21  
    Unit Cell

    a=75.94Å, b=88.11Å, c=100.51Å
    α=90.00, β=90.00, γ=90.00  
    Solvent content
    47.95  
    Matthews coefficient
    2.36  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    40.00-1.70Å (1.74-1.70Å)  
    Rall(%)
    19.4  
    Rwork(%)
    19.2 (28.9)  
    Rfree(%)
    24.8 (32.8)  
    Num. observed reflections
    36607 (2288)  
    Num. Rfree reflections
    1830 (113)  
    Completeness(%)
    97.8 (84.2)  

    Model parameters

    Num Atoms
    2681  
    Num Waters
    187  
    Num Hetatoms
    0  
    Model mean isotropic B factor (Å2)
    20.100  
    RMSD bond length (Å)
    0.023  
    RMSD bond angle
    1.875°  
    Filename uploaded
    iidp90915-FINAL.pdb (uploaded on Mar 02, 2010 5:02 PM)  
    Inserted
    Mar 02, 2010