IDP00001
(show subtarget assignments)
|
1 |
cloned |
No |
BA_4599 |
30259099 |
|
aldehyde-alcohol dehydrogenase |
867 |
Phase 1: October 2007 |
3MY7
|
24.5% |
Bacillus anthracis |
Energy metabolism |
Fermentation |
Notice (8): Undefined index: request_person [APP/views/targets/index.ctp, line 294]Code | Context </td>
<td class="RequestPerson<?php echo (isset($this->params['named']['project']) && $target['Target']['project']=='Community Requests' && $controller->checkPerm('edit_own', null, $controller->Session->read('Auth.User')) && $paginator_params['url']['request_person_check'])!="1"?" hidden":"" ?>">
<?php echo $target['Target']['request_person']; ?>
$___viewFn = "/var/www/html/csgid/app/views/targets/index.ctp"
$___dataForView = array(
"controller" => TargetsController
TargetsController::$name = "Targets"
TargetsController::$uses = array
TargetsController::$helpers = array
TargetsController::$components = array
TargetsController::$paginate = array
TargetsController::$restrict = array
TargetsController::$hidden_columns = array
TargetsController::$publicControllers = array
TargetsController::$here = "/csgid/cake/targets/index"
TargetsController::$webroot = "/csgid/"
TargetsController::$action = "index"
TargetsController::$params = array
TargetsController::$data = array
TargetsController::$viewPath = "targets"
TargetsController::$layoutPath = NULL
TargetsController::$viewVars = array
TargetsController::$modelNames = array
TargetsController::$base = "/csgid"
TargetsController::$layout = "default"
TargetsController::$autoRender = false
TargetsController::$autoLayout = true
TargetsController::$Component = Component object
TargetsController::$view = "View"
TargetsController::$ext = ".ctp"
TargetsController::$output = NULL
TargetsController::$plugin = NULL
TargetsController::$cacheAction = false
TargetsController::$persistModel = false
TargetsController::$passedArgs = array
TargetsController::$scaffold = false
TargetsController::$methods = array
TargetsController::$modelClass = "Target"
TargetsController::$modelKey = "target"
TargetsController::$validationErrors = NULL
TargetsController::$__httpCodes = NULL
TargetsController::$Auth = AuthComponent object
TargetsController::$RequestHandler = RequestHandlerComponent object
TargetsController::$Session = SessionComponent object
TargetsController::$LocusTagHandler = LocusTagHandlerComponent object
TargetsController::$MolecularMass = MolecularMassComponent object
TargetsController::$Toolbox = ToolboxComponent object
TargetsController::$Filters = FiltersComponent object
TargetsController::$Target = Target object
TargetsController::$RequestTarget = RequestTarget object
TargetsController::$Staff = Staff object
TargetsController::$User = User object,
"view_others" => true,
"view_vip_only" => false,
"view_pi_only" => false,
"view_contact_only" => false,
"view_own" => true,
"view_group" => false,
"view_request" => false,
"edit_own" => false,
"edit_group" => false,
"edit_others" => false,
"edit_own_profile" => false,
"edit_group_profile" => false,
"edit_other_profile" => false,
"edit_admin" => false,
"paginator_params" => array(
"url" => array(),
"Target" => array()
),
"projects" => array(
"Community Interest" => "Community Interest",
"Community Requests" => "Community Requests",
"Internal Request - Huan Ngo" => "Internal Request - Huan Ngo",
"January 2009" => "January 2009",
"Phase 1: October 2007" => "Phase 1: October 2007",
"Phase 2: March 2008" => "Phase 2: March 2008",
"Phase 3: June 2008" => "Phase 3: June 2008",
"Phase 4: April 2009" => "Phase 4: April 2009",
"Phase 5: 2010" => "Phase 5: 2010"
),
"tigr_main_categories" => array(
"" => "",
"0",
"Actin tail formation" => "Actin tail formation",
"Amino acid biosynthesis" => "Amino acid biosynthesis",
"Amino acid biosynthesis: Aromatic amino acid family" => "Amino acid biosynthesis: Aromatic amino acid family",
"Amino acid biosynthesis: Aspartate family" => "Amino acid biosynthesis: Aspartate family",
"Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers" => "Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers",
"Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers," => "Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers,",
"Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers,Purines, pyrimidin" => "Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers,Purines, pyrimidin",
"Amino acid biosynthesisCell envelope," => "Amino acid biosynthesisCell envelope,",
"Amino acid biosynthesisCentral intermediary metabolism" => "Amino acid biosynthesisCentral intermediary metabolism",
"Amino acid biosynthesisCentral intermediary metabolism," => "Amino acid biosynthesisCentral intermediary metabolism,",
"Amino acid biosynthesisCentral intermediary metabolism,Purines, pyrimidines, nucleosides, and nucleo" => "Amino acid biosynthesisCentral intermediary metabolism,Purines, pyrimidines, nucleosides, and nucleo",
"Amino acid biosynthesisEnergy metabolism," => "Amino acid biosynthesisEnergy metabolism,",
"Amino acid biosynthesisFatty acid and phospholipid metabolism" => "Amino acid biosynthesisFatty acid and phospholipid metabolism",
"Amino acid biosynthesisFatty acid and phospholipid metabolism," => "Amino acid biosynthesisFatty acid and phospholipid metabolism,",
"Amino acid biosynthesisRegulatory functions" => "Amino acid biosynthesisRegulatory functions",
"Amino acid biosynthesisRegulatory functions," => "Amino acid biosynthesisRegulatory functions,",
"Amino acid biosynthesis: Serine family" => "Amino acid biosynthesis: Serine family",
"Biosynthesis of cofactors, prosthetic groups, and carriers" => "Biosynthesis of cofactors, prosthetic groups, and carriers",
"Biosynthesis of cofactors, prosthetic groups, and carriersCell envelope," => "Biosynthesis of cofactors, prosthetic groups, and carriersCell envelope,",
"Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism" => "Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism",
"Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism," => "Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism,",
"Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism,Protein sy" => "Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism,Protein sy",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Glutathione and analogs" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Glutathione and analogs",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Heme, porphyrin, and cobalamin" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Heme, porphyrin, and cobalamin",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Menaquinone and ubiquinone" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Menaquinone and ubiquinone",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Other" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Other",
"Biosynthesis of cofactors, prosthetic groups, and carriersPurines, pyrimidines, nucleosides, and nuc" => "Biosynthesis of cofactors, prosthetic groups, and carriersPurines, pyrimidines, nucleosides, and nuc",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Pyridine nucleotides" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Pyridine nucleotides",
"Biosynthesis of cofactors, prosthetic groups, and carriersRegulatory functions," => "Biosynthesis of cofactors, prosthetic groups, and carriersRegulatory functions,",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Riboflavin, FMN, and FAD" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Riboflavin, FMN, and FAD",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Thiamine" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Thiamine",
"Cell envelope" => "Cell envelope",
"Cell envelope: Biosynthesis and degradation of murein sacculus and peptidoglycan" => "Cell envelope: Biosynthesis and degradation of murein sacculus and peptidoglycan",
"Cell envelope: Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides" => "Cell envelope: Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides",
"Cell envelopeCellular processes" => "Cell envelopeCellular processes",
"Cell envelopeCellular processes," => "Cell envelopeCellular processes,",
"Cell envelopeEnergy metabolism," => "Cell envelopeEnergy metabolism,",
"Cell envelopeFatty acid and phospholipid metabolism," => "Cell envelopeFatty acid and phospholipid metabolism,",
"Cell envelopeMobile and extrachromosomal element functions" => "Cell envelopeMobile and extrachromosomal element functions",
"Cell envelopeMobile and extrachromosomal element functions," => "Cell envelopeMobile and extrachromosomal element functions,",
"Cell envelope: Other" => "Cell envelope: Other",
"Cell envelopeProtein fate" => "Cell envelopeProtein fate",
"Cell envelopeProtein fate," => "Cell envelopeProtein fate,",
"Cell envelopeRegulatory functions,Unknown function" => "Cell envelopeRegulatory functions,Unknown function",
"Cell envelopeRegulatory functions,Unknown function," => "Cell envelopeRegulatory functions,Unknown function,",
"Cell envelope: Surface structures" => "Cell envelope: Surface structures",
"Cell envelopeTransport and binding proteins," => "Cell envelopeTransport and binding proteins,",
"Cell envelopeTransport and binding proteins,Cellular processes," => "Cell envelopeTransport and binding proteins,Cellular processes,",
"Cell envelopeUnclassified," => "Cell envelopeUnclassified,",
"Cell envelopeUnknown function" => "Cell envelopeUnknown function",
"Cell envelopeUnknown function," => "Cell envelopeUnknown function,",
"Cellular processes" => "Cellular processes",
"Cellular processes: Adaptations to atypical conditions" => "Cellular processes: Adaptations to atypical conditions",
"Cellular processes: Cell adhesion" => "Cellular processes: Cell adhesion",
"Cellular processes: Cell division" => "Cellular processes: Cell division",
"Cellular processesCentral intermediary metabolism,Signal transduction," => "Cellular processesCentral intermediary metabolism,Signal transduction,",
"Cellular processes: Chemotaxis and motility" => "Cellular processes: Chemotaxis and motility",
"Cellular processes: Detoxification" => "Cellular processes: Detoxification",
"Cellular processes: DNA transformation" => "Cellular processes: DNA transformation",
"Cellular processesEnergy metabolism," => "Cellular processesEnergy metabolism,",
"Cellular processesEnergy metabolism,Protein fate," => "Cellular processesEnergy metabolism,Protein fate,",
"Cellular processes: Other" => "Cellular processes: Other",
"Cellular processes: Pathogenesis" => "Cellular processes: Pathogenesis",
"Cellular processesProtein synthesis" => "Cellular processesProtein synthesis",
"Cellular processesProtein synthesis," => "Cellular processesProtein synthesis,",
"Cellular processesRegulatory functions" => "Cellular processesRegulatory functions",
"Cellular processesRegulatory functions," => "Cellular processesRegulatory functions,",
"Cellular processes: Sporulation and germination" => "Cellular processes: Sporulation and germination",
"Cellular processes: Toxin production and resistance" => "Cellular processes: Toxin production and resistance",
"Cellular processesTranscription" => "Cellular processesTranscription",
"Cellular processesTranscription," => "Cellular processesTranscription,",
"Cellular processesTransport and binding proteins" => "Cellular processesTransport and binding proteins",
"Cellular processesTransport and binding proteins," => "Cellular processesTransport and binding proteins,",
"Central intermediary metabolism" => "Central intermediary metabolism",
"Central intermediary metabolism: Amino sugars" => "Central intermediary metabolism: Amino sugars",
"Central intermediary metabolismEnergy metabolism," => "Central intermediary metabolismEnergy metabolism,",
"Central intermediary metabolismEnergy metabolism,Fatty acid and phospholipid metabolism," => "Central intermediary metabolismEnergy metabolism,Fatty acid and phospholipid metabolism,",
"Central intermediary metabolismEnergy metabolism,Unknown function," => "Central intermediary metabolismEnergy metabolism,Unknown function,",
"Central intermediary metabolism: Nitrogen metabolism" => "Central intermediary metabolism: Nitrogen metabolism",
"Central intermediary metabolism: Other" => "Central intermediary metabolism: Other",
"Central intermediary metabolismProtein fate," => "Central intermediary metabolismProtein fate,",
"Central intermediary metabolismPurines, pyrimidines, nucleosides, and nucleotides," => "Central intermediary metabolismPurines, pyrimidines, nucleosides, and nucleotides,",
"Central intermediary metabolismUnknown function" => "Central intermediary metabolismUnknown function",
"Central intermediary metabolismUnknown function," => "Central intermediary metabolismUnknown function,",
"Chr." => "Chr.",
"conserved hypothetical proteins" => "conserved hypothetical proteins",
"Conserved Hypothetical proteins" => "Conserved Hypothetical proteins",
"Disrupted reading frame" => "Disrupted reading frame",
"DNA metabolism" => "DNA metabolism",
"DNA metabolism: Degradation of DNA" => "DNA metabolism: Degradation of DNA",
"DNA metabolism: DNA replication, recombination, and repair" => "DNA metabolism: DNA replication, recombination, and repair",
"DNA metabolismMobile and extrachromosomal element functions," => "DNA metabolismMobile and extrachromosomal element functions,",
"DNA metabolismTranscription," => "DNA metabolismTranscription,",
"Energy metabolism" => "Energy metabolism",
"Energy metabolism: ATP-proton motive force interconversion" => "Energy metabolism: ATP-proton motive force interconversion",
"Energy metabolism: Biosynthesis and degradation of polysaccharides" => "Energy metabolism: Biosynthesis and degradation of polysaccharides",
"Energy metabolism: Electron transport" => "Energy metabolism: Electron transport",
"Energy metabolismFatty acid and phospholipid metabolism" => "Energy metabolismFatty acid and phospholipid metabolism",
"Energy metabolismFatty acid and phospholipid metabolism," => "Energy metabolismFatty acid and phospholipid metabolism,",
"Energy metabolism: Fermentation" => "Energy metabolism: Fermentation",
"Energy metabolism: Glycolysis/gluconeogenesis" => "Energy metabolism: Glycolysis/gluconeogenesis",
"Energy metabolismPurines, pyrimidines, nucleosides, and nucleotides," => "Energy metabolismPurines, pyrimidines, nucleosides, and nucleotides,",
"Energy metabolismRegulatory functions,Protein synthesis" => "Energy metabolismRegulatory functions,Protein synthesis",
"Energy metabolismRegulatory functions,Protein synthesis," => "Energy metabolismRegulatory functions,Protein synthesis,",
"Energy metabolism: Sugars" => "Energy metabolism: Sugars",
"Energy metabolism: TCA cycle" => "Energy metabolism: TCA cycle",
"Energy metabolismTransport and binding proteins," => "Energy metabolismTransport and binding proteins,",
"Energy metabolismTransport and binding proteins,Central intermediary metabolism," => "Energy metabolismTransport and binding proteins,Central intermediary metabolism,",
"Energy metabolismUnknown function," => "Energy metabolismUnknown function,",
"Entry and Cell-Cell Fusion" => "Entry and Cell-Cell Fusion",
"Fatty acid and phospholipid metabolism" => "Fatty acid and phospholipid metabolism",
"Fatty acid and phospholipid metabolism: Biosynthesis" => "Fatty acid and phospholipid metabolism: Biosynthesis",
"Fatty acid and phospholipid metabolism: Degradation" => "Fatty acid and phospholipid metabolism: Degradation",
"host defense modulator" => "host defense modulator",
"host-range" => "host-range",
"host-range, binds EGF receptor" => "host-range, binds EGF receptor",
"host-range determinant, host defense modulator" => "host-range determinant, host defense modulator",
"host range factor" => "host range factor",
"host range factor, host defense modulator" => "host range factor, host defense modulator",
"host range, host defense modulator, prevents syncytia" => "host range, host defense modulator, prevents syncytia",
"host-range, possible host defense modulator" => "host-range, possible host defense modulator",
"host range protein" => "host range protein",
"Hypothetical proteins" => "Hypothetical proteins",
"Hypothetical proteins: Conserved" => "Hypothetical proteins: Conserved",
"Hypothetical proteins: Domain" => "Hypothetical proteins: Domain",
"in virion, inactive" => "in virion, inactive",
"Mobile and extrachromosomal element functions" => "Mobile and extrachromosomal element functions",
"Mobile and extrachromosomal element functions: Other" => "Mobile and extrachromosomal element functions: Other",
"Mobile and extrachromosomal element functions: Plasmid functions" => "Mobile and extrachromosomal element functions: Plasmid functions",
"Mobile and extrachromosomal element functions: Prophage functions" => "Mobile and extrachromosomal element functions: Prophage functions",
"#N/A" => "#N/A",
"N/A" => "N/A",
"No Data" => "No Data",
"Protein fate" => "Protein fate",
"Protein fateCellular processes," => "Protein fateCellular processes,",
"Protein fate: Degradation of proteins, peptides, and glycopeptides" => "Protein fate: Degradation of proteins, peptides, and glycopeptides",
"Protein fateEnergy metabolism,DNA metabolism," => "Protein fateEnergy metabolism,DNA metabolism,",
"Protein fate: Protein and peptide secretion and trafficking" => "Protein fate: Protein and peptide secretion and trafficking",
"Protein fate: Protein folding and stabilization" => "Protein fate: Protein folding and stabilization",
"Protein fate: Protein modification and repair" => "Protein fate: Protein modification and repair",
"Protein fateRegulatory functions" => "Protein fateRegulatory functions",
"Protein fateRegulatory functions," => "Protein fateRegulatory functions,",
"Protein synthesis" => "Protein synthesis",
"Protein synthesis: Ribosomal proteins: synthesis and modification" => "Protein synthesis: Ribosomal proteins: synthesis and modification",
"Protein synthesis: tRNA aminoacylation" => "Protein synthesis: tRNA aminoacylation",
"Protein synthesis: tRNA and rRNA base modification" => "Protein synthesis: tRNA and rRNA base modification",
"Purines, pyrimidines, nucleosides, and nucleotides" => "Purines, pyrimidines, nucleosides, and nucleotides",
"Purines, pyrimidines, nucleosides, and nucleotidesEnergy metabolism," => "Purines, pyrimidines, nucleosides, and nucleotidesEnergy metabolism,",
"Purines, pyrimidines, nucleosides, and nucleotides: Nucleotide and nucleoside interconversions" => "Purines, pyrimidines, nucleosides, and nucleotides: Nucleotide and nucleoside interconversions",
"Purines, pyrimidines, nucleosides, and nucleotides: Other" => "Purines, pyrimidines, nucleosides, and nucleotides: Other",
"Purines, pyrimidines, nucleosides, and nucleotidesProtein synthesis," => "Purines, pyrimidines, nucleosides, and nucleotidesProtein synthesis,",
"Purines, pyrimidines, nucleosides, and nucleotides: Pyrimidine ribonucleotide biosynthesis" => "Purines, pyrimidines, nucleosides, and nucleotides: Pyrimidine ribonucleotide biosynthesis",
"Purines, pyrimidines, nucleosides, and nucleotides: Salvage of nucleosides and nucleotides" => "Purines, pyrimidines, nucleosides, and nucleotides: Salvage of nucleosides and nucleotides",
"Purines, pyrimidines, nucleosides, and nucleotides: Sugar-nucleotide biosynthesis and conversions" => "Purines, pyrimidines, nucleosides, and nucleotides: Sugar-nucleotide biosynthesis and conversions",
"Purines, pyrimidines, nucleosides, and nucleotidesTransport and binding proteins," => "Purines, pyrimidines, nucleosides, and nucleotidesTransport and binding proteins,",
"Regulatory functions" => "Regulatory functions",
"Regulatory functionsAmino acid biosynthesis" => "Regulatory functionsAmino acid biosynthesis",
"Regulatory functionsAmino acid biosynthesis," => "Regulatory functionsAmino acid biosynthesis,",
"Regulatory functions: DNA interactions" => "Regulatory functions: DNA interactions",
"Regulatory functionsDNA metabolism," => "Regulatory functionsDNA metabolism,",
"Regulatory functions: Other" => "Regulatory functions: Other",
"Regulatory functions: RNA interactions" => "Regulatory functions: RNA interactions",
"Regulatory functionsSignal transduction" => "Regulatory functionsSignal transduction",
"Regulatory functionsSignal transduction," => "Regulatory functionsSignal transduction,",
"Regulatory functionsTransport and binding proteins," => "Regulatory functionsTransport and binding proteins,",
"Signal transduction" => "Signal transduction",
"Signal transduction: PTS" => "Signal transduction: PTS",
"S-S bond formation pathway" => "S-S bond formation pathway",
"Transcription" => "Transcription",
"Transcription: Degradation of RNA" => "Transcription: Degradation of RNA",
"TranscriptionUnknown function," => "TranscriptionUnknown function,",
"Transport and binding proteins" => "Transport and binding proteins",
"Transport and binding proteins: Amino acids, peptides and amines" => "Transport and binding proteins: Amino acids, peptides and amines",
"Transport and binding proteins: Anions" => "Transport and binding proteins: Anions",
"Transport and binding proteinsBiosynthesis of cofactors, prosthetic groups, and carriers," => "Transport and binding proteinsBiosynthesis of cofactors, prosthetic groups, and carriers,",
"Transport and binding proteins: Carbohydrates, organic alcohols, and acids" => "Transport and binding proteins: Carbohydrates, organic alcohols, and acids",
"Transport and binding proteins: Cations and iron carrying compounds" => "Transport and binding proteins: Cations and iron carrying compounds",
"Transport and binding proteins: Nucleosides, purines and pyrimidines" => "Transport and binding proteins: Nucleosides, purines and pyrimidines",
"Transport and binding proteins: Other" => "Transport and binding proteins: Other",
"Transport and binding proteins: Unknown substrate" => "Transport and binding proteins: Unknown substrate",
"Unclassified" => "Unclassified",
"Unclassified: Role category not yet assigned" => "Unclassified: Role category not yet assigned",
"unknown" => "unknown",
"unknown, conserved protein" => "unknown, conserved protein",
"Unknown function" => "Unknown function",
"Unknown function: Enzymes of unknown specificity" => "Unknown function: Enzymes of unknown specificity",
"Unknown function: General" => "Unknown function: General",
"Viral functions" => "Viral functions",
"Viral functions: General" => "Viral functions: General"
),
"organisms" => array(
"Acinetobacter baumannii",
"Acinetobacter baumannii AB0057",
"Acinetobacter baumannii ATCC 17978",
"Acinetobacter baumannii SDF",
"Acinetobacter haemolyticus",
"Acinetobacter sp. ATCC 27244",
"Actinobacillus pleuropneumoniae serovar 5b str. L20",
"Agrobacterium tumefaciens str. C58",
"Aquifex aeolicus VF5",
"Aspergillus fumigatus A1163",
"Bacillus anthracis str. Ames",
"Bacillus anthracis str. 'Ames Ancestor'",
"Bacillus anthracis str. Sterne",
"Bacillus subtilis",
"Bacillus subtilis subsp. subtilis str. 168",
"Bacteroides thetaiotaomicron VPI-5482",
"Bifidobacterium longum subsp. infantis ATCC 15697",
"Bordetella bronchiseptica RB50",
"Bordetella pertussis Tohama I",
"Borrelia burgdorferi B31",
"Burkholderia mallei ATCC 23344",
"Burkholderia pseudomallei K96243",
"Burkholderia pseudomallei MSHR346",
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819",
"Cell fusing agent virus",
"Chlamydia muridarum Nigg",
"Chlamydia trachomatis",
"Chlamydia trachomatis D/UW-3/CX",
"Clostridium difficile 630",
"Clostridium perfringens ATCC 13124",
"Clostridium perfringens str. 13",
"Cowpox virus",
"Cowpox virus (Brighton Red)",
"Coxiella burnetii RSA 493",
"Coxsackievirus B3 (strain Woodruff)",
"Cryptosporidium parvum",
"Dengue virus 1",
"Dengue virus 2",
"Dengue virus 3",
"Dengue virus 4",
"Ectromelia virus",
"Enterobacter cloacae",
"Enterococcus faecalis",
"Enterococcus faecalis V583",
"Enterococcus faecium",
"Enterococcus faecium DO",
"Enterococcus gallinarum",
"Escherichia coli",
"Escherichia coli 042",
"Escherichia coli CFT073",
"Escherichia coli ETEC H10407",
"Escherichia coli K-12",
"Escherichia coli O103:H2 str. 12009",
"Escherichia coli O157:H7 str. EDL933",
"Escherichia coli O157:H7 str. Sakai",
"Escherichia coli str. K-12 substr. MG1655",
"Escherichia coli UTI89",
"Francisella novicida U112",
"Francisella tularensis subsp. holarctica LVS",
"Francisella tularensis subsp. tularensis SCHU S4",
"Haemophilus influenzae PittII",
"Helicobacter pylori",
"Helicobacter pylori 26695",
"Helicobacter pylori J99",
"Herpesvirus saimiri (strain 488)",
"Homo sapiens",
"Human echovirus 7",
"Human herpesvirus 6",
"Human herpesvirus 8",
"Human herpesvirus 8 type M",
"Influenza A virus (A/Aichi/2/1968(H3N2))",
"Influenza A virus (A/California/07/2009(H1N1))",
"Influenza A virus (A/Puerto Rico/8/1934(H1N1))",
"Influenza A virus (A/udorn/1972(H3N2))",
"Influenza B virus (B/Lee/40)",
"Japanese encephalitis virus",
"Legionella pneumophila 130b",
"Legionella pneumophila subsp. pneumophila str. Philadelphia 1",
"Listeria monocytogenes",
"Listeria monocytogenes EGD-e",
"Modoc virus",
"Monkeypox virus",
"Montana myotis leukoencephalitis virus",
"Murid herpesvirus 4",
"Murray Valley encephalitis virus",
"Mus musculus",
"Mycobacterium smegmatis str. MC2 155",
"Mycobacterium tuberculosis CDC1551",
"Mycobacterium tuberculosis H37Rv",
"Myxoma virus (strain Lausanne)",
"Neisseria gonorrhoeae",
"Neisseria gonorrhoeae FA 1090",
"Plasmodium falciparum 3D7",
"Plasmodium vivax",
"Plasmodium vivax SaI-1",
"Proteus mirabilis",
"Providencia stuartii",
"Pseudomonas aeruginosa",
"Pseudomonas aeruginosa PAO1",
"Pseudomonas aeruginosa UCBPP-PA14",
"Pseudomonas fluorescens Pf-5",
"Pseudomonas putida KT2440",
"Rickettsia prowazekii str. Madrid E",
"Rio Bravo virus",
"Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150",
"Salmonella enterica subsp. enterica serovar Typhimurium",
"Salmonella enterica subsp. enterica serovar Typhimurium str. LT2",
"SARS coronavirus",
"Shigella dysenteriae 1012",
"Shigella dysenteriae Sd197",
"Shigella flexneri",
"Shigella flexneri 2a str. 2457T",
"Shigella flexneri 2a str. 301",
"Staphylococcus aureus",
"Staphylococcus aureus subsp. aureus COL",
"Staphylococcus aureus subsp. aureus MRSA252",
"Staphylococcus aureus subsp. aureus Mu3",
"Staphylococcus aureus subsp. aureus Mu50",
"Staphylococcus aureus subsp. aureus N315",
"Staphylococcus aureus subsp. aureus NCTC 8325",
"Staphylococcus aureus subsp. aureus str. Newman",
"Staphylococcus aureus subsp. aureus USA300_FPR3757",
"Staphylococcus aureus subsp. aureus USA300_TCH1516",
"Staphylococcus epidermidis",
"Staphylococcus epidermidis RP62A",
"Staphylococcus haemolyticus",
"St. Louis encephalitis virus (strain MS1-7)",
"Streptococcus agalactiae",
"Streptococcus agalactiae 2603V/R",
"Streptococcus agalactiae A909",
"Streptococcus agalactiae NEM316",
"Streptococcus bovis ATCC 700338",
"Streptococcus downei F0415",
"Streptococcus dysgalactiae subsp. equisimilis",
"Streptococcus dysgalactiae subsp. equisimilis GGS_124",
"Streptococcus equinus ATCC 9812",
"Streptococcus equi subsp. zooepidemicus",
"Streptococcus equi subsp. zooepidemicus MGCS10565",
"Streptococcus gallolyticus UCN34",
"Streptococcus infantarius subsp. infantarius ATCC BAA-102",
"Streptococcus mutans UA159",
"Streptococcus parauberis KCTC 11537",
"Streptococcus phage SM1",
"Streptococcus pneumoniae",
"Streptococcus pneumoniae G54",
"Streptococcus pneumoniae Hungary19A-6",
"Streptococcus pneumoniae P1031",
"Streptococcus pneumoniae R6",
"Streptococcus pneumoniae str. Canada MDR_19A",
"Streptococcus pneumoniae str. Canada MDR_19F",
"Streptococcus pneumoniae TCH8431/19A",
"Streptococcus pneumoniae TIGR4",
"Streptococcus porcinus str. Jelinkova 176",
"Streptococcus pyogenes",
"Streptococcus pyogenes M1 GAS",
"Streptococcus pyogenes MGAS5005",
"Streptococcus pyogenes NZ131",
"Streptococcus pyogenes str. Manfredo",
"Streptococcus sp. 'group G'",
"Streptococcus suis P1/7",
"Streptococcus suis SC84",
"Streptococcus thermophilus LMD-9",
"Streptococcus thermophilus LMG 18311",
"Streptococcus uberis 0140J",
"Streptomyces fradiae",
"Streptomyces griseus",
"Streptomyces toyocaensis",
"synthetic construct",
"Toxoplasma gondii",
"Toxoplasma gondii GT1",
"Toxoplasma gondii ME49",
"Treponema pallidum subsp. pallidum str. Nichols",
"Vaccinia virus",
"Vaccinia virus Copenhagen",
"Vaccinia virus L-IPV",
"Vaccinia virus WR",
"Vibrio cholerae",
"Vibrio cholerae O1 biovar El Tor str. N16961",
"Vibrio cholerae O395",
"Vibrio fischeri ES114",
"Vibrio mimicus",
"Vibrio parahaemolyticus",
"Vibrio parahaemolyticus RIMD 2210633",
"Vibrio sp. AND4",
"Vibrio vulnificus CMCP6",
"Western equine encephalomyelitis virus",
"West Nile virus",
"Yellow fever virus",
"Yersinia pestis CO92",
"Yersinia pestis KIM10+",
"Yersinia pseudotuberculosis IP 32953",
"Zaire ebolavirus"
),
"species" => array(
"Acinetobacter baumannii",
"Acinetobacter haemolyticus",
"Acinetobacter sp. ATCC 27244",
"Actinobacillus pleuropneumoniae",
"Agrobacterium tumefaciens",
"Aliivibrio fischeri",
"Aquifex aeolicus",
"Aspergillus fumigatus",
"Bacillus anthracis",
"Bacillus subtilis",
"Bacteroides thetaiotaomicron",
"Bifidobacterium longum",
"Bordetella bronchiseptica",
"Bordetella pertussis",
"Borrelia burgdorferi",
"Burkholderia mallei",
"Burkholderia pseudomallei",
"Campylobacter jejuni",
"Cell fusing agent virus",
"Chlamydia muridarum",
"Chlamydia trachomatis",
"[Clostridium] difficile",
"Clostridium perfringens",
"Cowpox virus",
"Coxiella burnetii",
"Cryptosporidium parvum",
"Dengue virus",
"Ectromelia virus",
"Enterobacter cloacae",
"Enterococcus faecalis",
"Enterococcus faecium",
"Enterococcus gallinarum",
"Escherichia coli",
"Francisella novicida",
"Francisella tularensis",
"Haemophilus influenzae",
"Helicobacter pylori",
"Homo sapiens",
"Human enterovirus B",
"Human herpesvirus 6",
"Human herpesvirus 8",
"Influenza A virus",
"Influenza B virus",
"Japanese encephalitis virus",
"Legionella pneumophila",
"Listeria monocytogenes",
"Modoc virus",
"Monkeypox virus",
"Montana myotis leukoencephalitis virus",
"Murid herpesvirus 4",
"Murray Valley encephalitis virus",
"Mus musculus",
"Mycobacterium smegmatis",
"Mycobacterium tuberculosis",
"Myxoma virus",
"Neisseria gonorrhoeae",
"Plasmodium falciparum",
"Plasmodium vivax",
"Proteus mirabilis",
"Providencia stuartii",
"Pseudomonas aeruginosa",
"Pseudomonas fluorescens",
"Pseudomonas putida",
"Rickettsia prowazekii",
"Rio Bravo virus",
"Saimiriine herpesvirus 2",
"Salmonella enterica",
"Severe acute respiratory syndrome-related coronavirus",
"Shigella dysenteriae",
"Shigella flexneri",
"Staphylococcus aureus",
"Staphylococcus epidermidis",
"Staphylococcus haemolyticus",
"St. Louis encephalitis virus",
"Streptococcus agalactiae",
"Streptococcus downei",
"Streptococcus dysgalactiae",
"Streptococcus equi",
"Streptococcus equinus",
"Streptococcus gallolyticus",
"Streptococcus infantarius",
"Streptococcus mutans",
"Streptococcus parauberis",
"Streptococcus phage SM1",
"Streptococcus pneumoniae",
"Streptococcus porcinus",
"Streptococcus pyogenes",
"Streptococcus sp. 'group G'",
"Streptococcus suis",
"Streptococcus thermophilus",
"Streptococcus uberis",
"Streptomyces fradiae",
"Streptomyces griseus",
"Streptomyces toyocaensis",
"synthetic construct",
"Toxoplasma gondii",
"Treponema pallidum",
"Vaccinia virus",
"Vibrio cholerae",
"Vibrio mimicus",
"Vibrio parahaemolyticus",
"Vibrio sp. AND4",
"Vibrio vulnificus",
"Western equine encephalomyelitis virus",
"West Nile virus",
"Yellow fever virus",
"Yersinia pestis",
"Yersinia pseudotuberculosis",
"Zaire ebolavirus"
),
"priority" => array(
"0",
"1",
"6",
"8"
),
"stage" => array(
"cloned" => "cloned",
"crystallized" => "crystallized",
"crystal_structure" => "crystal_structure",
"diffraction" => "diffraction",
"expressed" => "expressed",
"expression_tested" => "expression_tested",
"in_crystallization_trials" => "in_crystallization_trials",
"in_pdb" => "in_pdb",
"purified" => "purified",
"selected" => "selected",
"soluble" => "soluble",
"work_stopped" => "work_stopped"
),
"screening_options" => array(
"Yes",
"No"
),
"ligand_studies" => array(
"Yes",
"No"
),
"functional_follow_up" => array(
"Yes",
"No"
),
"clone_location" => array(
"ANL" => "Argonne National Laboratory",
"COLLABORATORS" => "Collaborators of the CSGID",
"JCVI" => "J. Craig Venter Institute",
"NU" => "Northwestern University",
"UT" => "University of Toronto",
"UTSW" => "University of Texas Southwestern Medical Center",
"UVA" => "University of Virginia",
"WU" => "Washington University"
),
"requesters" => null,
"options" => array(),
"colors" => array(
"work_stopped" => "#FFFFFF",
"selected" => "#F0F0F0",
"cloned" => "#E0E0E0",
"expressed" => "#D0D0D0",
"soluble" => "#C0C0C0",
"purified" => "#B0B0B0",
"in_crystallization_trials" => "#B0B0B0",
"crystallized" => "#E0C0C0",
"diffraction" => "#F0C0C0",
"crystal_structure" => "#FFC0C0",
"in_pdb" => "#FFC0C0"
),
"targets" => array(
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array(),
array()
),
"filters" => "",
"authorized" => false,
"types" => "{"TargetProject":"Selection Phase","TargetTigrMainCategory":"TIGR Main Category","TargetOrganism":"Organism","TargetSpecies":"Species","TargetPriority":"Priority","TargetKeyword":"Keyword","TargetStage":"Stage","TargetCloneLocation":"Lab (by clone Location)","TargetScreening":"Virtual screening","TargetLigandStudies":"Ligand studies","TargetFunctionalFollowUp":"Functional follow up"}",
"bool" => array(
"true" => "true",
"false" => "false"
)
)
$loadHelpers = true
$cached = false
$jqueryEngine = JqueryEngineHelper
JqueryEngineHelper::$_optionMap = array
JqueryEngineHelper::$_callbackArguments = array
JqueryEngineHelper::$jQueryObject = "$"
JqueryEngineHelper::$useNative = true
JqueryEngineHelper::$selection = NULL
JqueryEngineHelper::$bufferedMethods = array
JqueryEngineHelper::$helpers = NULL
JqueryEngineHelper::$base = "/csgid"
JqueryEngineHelper::$webroot = "/csgid/"
JqueryEngineHelper::$theme = NULL
JqueryEngineHelper::$here = "/csgid/cake/targets/index"
JqueryEngineHelper::$params = array
JqueryEngineHelper::$action = "index"
JqueryEngineHelper::$plugin = NULL
JqueryEngineHelper::$data = array
JqueryEngineHelper::$namedArgs = NULL
JqueryEngineHelper::$argSeparator = NULL
JqueryEngineHelper::$validationErrors = NULL
JqueryEngineHelper::$tags = array
JqueryEngineHelper::$__tainted = NULL
JqueryEngineHelper::$__cleaned = NULL
$js = JsHelper
JsHelper::$bufferScripts = true
JsHelper::$helpers = array
JsHelper::$__jsVars = array
JsHelper::$__bufferedScripts = array
JsHelper::$__engineName = "JqueryEngine"
JsHelper::$setVariable = "app"
JsHelper::$base = "/csgid"
JsHelper::$webroot = "/csgid/"
JsHelper::$theme = NULL
JsHelper::$here = "/csgid/cake/targets/index"
JsHelper::$params = array
JsHelper::$action = "index"
JsHelper::$plugin = NULL
JsHelper::$data = array
JsHelper::$namedArgs = NULL
JsHelper::$argSeparator = NULL
JsHelper::$validationErrors = NULL
JsHelper::$tags = array
JsHelper::$__tainted = NULL
JsHelper::$__cleaned = NULL
JsHelper::$Html = HtmlHelper object
JsHelper::$Form = FormHelper object
JsHelper::$JqueryEngine = JqueryEngineHelper object
$paginator = PaginatorHelper
PaginatorHelper::$helpers = array
PaginatorHelper::$__defaultModel = "Target"
PaginatorHelper::$_ajaxHelperClass = "Js"
PaginatorHelper::$options = array
PaginatorHelper::$base = "/csgid"
PaginatorHelper::$webroot = "/csgid/"
PaginatorHelper::$theme = NULL
PaginatorHelper::$here = "/csgid/cake/targets/index"
PaginatorHelper::$params = array
PaginatorHelper::$action = "index"
PaginatorHelper::$plugin = NULL
PaginatorHelper::$data = array
PaginatorHelper::$namedArgs = NULL
PaginatorHelper::$argSeparator = NULL
PaginatorHelper::$validationErrors = NULL
PaginatorHelper::$tags = array
PaginatorHelper::$__tainted = NULL
PaginatorHelper::$__cleaned = NULL
PaginatorHelper::$Html = HtmlHelper object
PaginatorHelper::$Js = JsHelper object
$javascript = JavascriptHelper
JavascriptHelper::$useNative = true
JavascriptHelper::$enabled = true
JavascriptHelper::$safe = false
JavascriptHelper::$tags = array
JavascriptHelper::$_blockOptions = array
JavascriptHelper::$_cachedEvents = array
JavascriptHelper::$_cacheEvents = false
JavascriptHelper::$_cacheToFile = false
JavascriptHelper::$_cacheAll = false
JavascriptHelper::$_rules = array
JavascriptHelper::$__scriptBuffer = NULL
JavascriptHelper::$helpers = NULL
JavascriptHelper::$base = "/csgid"
JavascriptHelper::$webroot = "/csgid/"
JavascriptHelper::$theme = NULL
JavascriptHelper::$here = "/csgid/cake/targets/index"
JavascriptHelper::$params = array
JavascriptHelper::$action = "index"
JavascriptHelper::$plugin = NULL
JavascriptHelper::$data = array
JavascriptHelper::$namedArgs = NULL
JavascriptHelper::$argSeparator = NULL
JavascriptHelper::$validationErrors = NULL
JavascriptHelper::$__tainted = NULL
JavascriptHelper::$__cleaned = NULL
$ajax = AjaxHelper
AjaxHelper::$helpers = array
AjaxHelper::$Html = HtmlHelper object
AjaxHelper::$Javascript = JavascriptHelper object
AjaxHelper::$callbacks = array
AjaxHelper::$ajaxOptions = array
AjaxHelper::$dragOptions = array
AjaxHelper::$dropOptions = array
AjaxHelper::$sortOptions = array
AjaxHelper::$sliderOptions = array
AjaxHelper::$editorOptions = array
AjaxHelper::$autoCompleteOptions = array
AjaxHelper::$__ajaxBuffer = array
AjaxHelper::$base = "/csgid"
AjaxHelper::$webroot = "/csgid/"
AjaxHelper::$theme = NULL
AjaxHelper::$here = "/csgid/cake/targets/index"
AjaxHelper::$params = array
AjaxHelper::$action = "index"
AjaxHelper::$plugin = NULL
AjaxHelper::$data = array
AjaxHelper::$namedArgs = NULL
AjaxHelper::$argSeparator = NULL
AjaxHelper::$validationErrors = NULL
AjaxHelper::$tags = array
AjaxHelper::$__tainted = NULL
AjaxHelper::$__cleaned = NULL
AjaxHelper::$Form = FormHelper object
$session = SessionHelper
SessionHelper::$helpers = array
SessionHelper::$__active = true
SessionHelper::$valid = false
SessionHelper::$error = false
SessionHelper::$_userAgent = "58b2de6416320958e9c35461dea35eb5"
SessionHelper::$path = "/"
SessionHelper::$lastError = NULL
SessionHelper::$security = "medium"
SessionHelper::$time = 1371696863
SessionHelper::$sessionTime = 1371708863
SessionHelper::$watchKeys = array
SessionHelper::$id = NULL
SessionHelper::$host = NULL
SessionHelper::$timeout = NULL
SessionHelper::$base = "/csgid"
SessionHelper::$webroot = "/csgid/"
SessionHelper::$here = "/csgid/cake/targets/index"
SessionHelper::$params = array
SessionHelper::$action = "index"
SessionHelper::$data = array
SessionHelper::$theme = NULL
SessionHelper::$plugin = NULL
$actions = ActionsHelper
ActionsHelper::$helpers = array
ActionsHelper::$addIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_01.png"
ActionsHelper::$listIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_61.png"
ActionsHelper::$deleteIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_02.png"
ActionsHelper::$editIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_45.png"
ActionsHelper::$loginIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_59.png"
ActionsHelper::$logoutIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_51.png"
ActionsHelper::$cancelIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_05.png"
ActionsHelper::$okIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_06.png"
ActionsHelper::$settingsIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_41.png"
ActionsHelper::$bugIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_50.png"
ActionsHelper::$menuIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_20.png"
ActionsHelper::$lockIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_42.png"
ActionsHelper::$warningIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_11.png"
ActionsHelper::$internalIconLoc = "/img/Fwdw_icons/standart/png/24x24/001_37.png"
ActionsHelper::$base = "/csgid"
ActionsHelper::$webroot = "/csgid/"
ActionsHelper::$theme = NULL
ActionsHelper::$here = "/csgid/cake/targets/index"
ActionsHelper::$params = array
ActionsHelper::$action = "index"
ActionsHelper::$plugin = NULL
ActionsHelper::$data = array
ActionsHelper::$namedArgs = NULL
ActionsHelper::$argSeparator = NULL
ActionsHelper::$validationErrors = NULL
ActionsHelper::$tags = array
ActionsHelper::$__tainted = NULL
ActionsHelper::$__cleaned = NULL
ActionsHelper::$Html = HtmlHelper object
ActionsHelper::$Session = SessionHelper object
ActionsHelper::$Ajax = AjaxHelper object
$date = DateHelper
DateHelper::$helpers = NULL
DateHelper::$base = "/csgid"
DateHelper::$webroot = "/csgid/"
DateHelper::$theme = NULL
DateHelper::$here = "/csgid/cake/targets/index"
DateHelper::$params = array
DateHelper::$action = "index"
DateHelper::$plugin = NULL
DateHelper::$data = array
DateHelper::$namedArgs = NULL
DateHelper::$argSeparator = NULL
DateHelper::$validationErrors = NULL
DateHelper::$tags = array
DateHelper::$__tainted = NULL
DateHelper::$__cleaned = NULL
$form = FormHelper
FormHelper::$helpers = array
FormHelper::$fieldset = array
FormHelper::$__options = array
FormHelper::$fields = array
FormHelper::$requestType = "post"
FormHelper::$defaultModel = NULL
FormHelper::$_inputDefaults = array
FormHelper::$base = "/csgid"
FormHelper::$webroot = "/csgid/"
FormHelper::$theme = NULL
FormHelper::$here = "/csgid/cake/targets/index"
FormHelper::$params = array
FormHelper::$action = "index"
FormHelper::$plugin = NULL
FormHelper::$data = array
FormHelper::$namedArgs = NULL
FormHelper::$argSeparator = NULL
FormHelper::$validationErrors = NULL
FormHelper::$tags = array
FormHelper::$__tainted = NULL
FormHelper::$__cleaned = NULL
FormHelper::$Html = HtmlHelper object
$html = HtmlHelper
HtmlHelper::$tags = array
HtmlHelper::$_crumbs = array
HtmlHelper::$__includedScripts = array
HtmlHelper::$_scriptBlockOptions = array
HtmlHelper::$__docTypes = array
HtmlHelper::$helpers = NULL
HtmlHelper::$base = "/csgid"
HtmlHelper::$webroot = "/csgid/"
HtmlHelper::$theme = NULL
HtmlHelper::$here = "/csgid/cake/targets/index"
HtmlHelper::$params = array
HtmlHelper::$action = "index"
HtmlHelper::$plugin = NULL
HtmlHelper::$data = array
HtmlHelper::$namedArgs = NULL
HtmlHelper::$argSeparator = NULL
HtmlHelper::$validationErrors = NULL
HtmlHelper::$__tainted = NULL
HtmlHelper::$__cleaned = NULL
$controller = TargetsController
TargetsController::$name = "Targets"
TargetsController::$uses = array
TargetsController::$helpers = array
TargetsController::$components = array
TargetsController::$paginate = array
TargetsController::$restrict = array
TargetsController::$hidden_columns = array
TargetsController::$publicControllers = array
TargetsController::$here = "/csgid/cake/targets/index"
TargetsController::$webroot = "/csgid/"
TargetsController::$action = "index"
TargetsController::$params = array
TargetsController::$data = array
TargetsController::$viewPath = "targets"
TargetsController::$layoutPath = NULL
TargetsController::$viewVars = array
TargetsController::$modelNames = array
TargetsController::$base = "/csgid"
TargetsController::$layout = "default"
TargetsController::$autoRender = false
TargetsController::$autoLayout = true
TargetsController::$Component = Component object
TargetsController::$view = "View"
TargetsController::$ext = ".ctp"
TargetsController::$output = NULL
TargetsController::$plugin = NULL
TargetsController::$cacheAction = false
TargetsController::$persistModel = false
TargetsController::$passedArgs = array
TargetsController::$scaffold = false
TargetsController::$methods = array
TargetsController::$modelClass = "Target"
TargetsController::$modelKey = "target"
TargetsController::$validationErrors = NULL
TargetsController::$__httpCodes = NULL
TargetsController::$Auth = AuthComponent object
TargetsController::$RequestHandler = RequestHandlerComponent object
TargetsController::$Session = SessionComponent object
TargetsController::$LocusTagHandler = LocusTagHandlerComponent object
TargetsController::$MolecularMass = MolecularMassComponent object
TargetsController::$Toolbox = ToolboxComponent object
TargetsController::$Filters = FiltersComponent object
TargetsController::$Target = Target object
TargetsController::$RequestTarget = RequestTarget object
TargetsController::$Staff = Staff object
TargetsController::$User = User object
$view_others = true
$view_vip_only = false
$view_pi_only = false
$view_contact_only = false
$view_own = true
$view_group = false
$view_request = false
$edit_own = false
$edit_group = false
$edit_others = false
$edit_own_profile = false
$edit_group_profile = false
$edit_other_profile = false
$edit_admin = false
$paginator_params = array(
"url" => array(
"target_id_check" => "1",
"locus_tag_check" => "1",
"ncbi_gi_check" => "1",
"gene_name_check" => "1",
"common_name_check" => "1",
"length_check" => "1",
"justification_check" => "1",
"project_check" => "1",
"homolog_pdb_id_check" => "1",
"homolog_sequence_identity_check" => "1",
"organism_check" => "1",
"tigr_main_role_check" => "1",
"tigr_sub_role_check" => "1",
"priority_check" => "1",
"stage_check" => "1",
"screening_check" => "1",
"request_person_check" => "1",
"controller" => "targets",
"action" => "index"
),
"Target" => array(
"options" => array()
)
)
$projects = array(
"Community Interest" => "Community Interest",
"Community Requests" => "Community Requests",
"Internal Request - Huan Ngo" => "Internal Request - Huan Ngo",
"January 2009" => "January 2009",
"Phase 1: October 2007" => "Phase 1: October 2007",
"Phase 2: March 2008" => "Phase 2: March 2008",
"Phase 3: June 2008" => "Phase 3: June 2008",
"Phase 4: April 2009" => "Phase 4: April 2009",
"Phase 5: 2010" => "Phase 5: 2010"
)
$tigr_main_categories = array(
"" => "",
"0",
"Actin tail formation" => "Actin tail formation",
"Amino acid biosynthesis" => "Amino acid biosynthesis",
"Amino acid biosynthesis: Aromatic amino acid family" => "Amino acid biosynthesis: Aromatic amino acid family",
"Amino acid biosynthesis: Aspartate family" => "Amino acid biosynthesis: Aspartate family",
"Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers" => "Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers",
"Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers," => "Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers,",
"Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers,Purines, pyrimidin" => "Amino acid biosynthesisBiosynthesis of cofactors, prosthetic groups, and carriers,Purines, pyrimidin",
"Amino acid biosynthesisCell envelope," => "Amino acid biosynthesisCell envelope,",
"Amino acid biosynthesisCentral intermediary metabolism" => "Amino acid biosynthesisCentral intermediary metabolism",
"Amino acid biosynthesisCentral intermediary metabolism," => "Amino acid biosynthesisCentral intermediary metabolism,",
"Amino acid biosynthesisCentral intermediary metabolism,Purines, pyrimidines, nucleosides, and nucleo" => "Amino acid biosynthesisCentral intermediary metabolism,Purines, pyrimidines, nucleosides, and nucleo",
"Amino acid biosynthesisEnergy metabolism," => "Amino acid biosynthesisEnergy metabolism,",
"Amino acid biosynthesisFatty acid and phospholipid metabolism" => "Amino acid biosynthesisFatty acid and phospholipid metabolism",
"Amino acid biosynthesisFatty acid and phospholipid metabolism," => "Amino acid biosynthesisFatty acid and phospholipid metabolism,",
"Amino acid biosynthesisRegulatory functions" => "Amino acid biosynthesisRegulatory functions",
"Amino acid biosynthesisRegulatory functions," => "Amino acid biosynthesisRegulatory functions,",
"Amino acid biosynthesis: Serine family" => "Amino acid biosynthesis: Serine family",
"Biosynthesis of cofactors, prosthetic groups, and carriers" => "Biosynthesis of cofactors, prosthetic groups, and carriers",
"Biosynthesis of cofactors, prosthetic groups, and carriersCell envelope," => "Biosynthesis of cofactors, prosthetic groups, and carriersCell envelope,",
"Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism" => "Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism",
"Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism," => "Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism,",
"Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism,Protein sy" => "Biosynthesis of cofactors, prosthetic groups, and carriersCentral intermediary metabolism,Protein sy",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Glutathione and analogs" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Glutathione and analogs",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Heme, porphyrin, and cobalamin" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Heme, porphyrin, and cobalamin",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Menaquinone and ubiquinone" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Menaquinone and ubiquinone",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Other" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Other",
"Biosynthesis of cofactors, prosthetic groups, and carriersPurines, pyrimidines, nucleosides, and nuc" => "Biosynthesis of cofactors, prosthetic groups, and carriersPurines, pyrimidines, nucleosides, and nuc",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Pyridine nucleotides" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Pyridine nucleotides",
"Biosynthesis of cofactors, prosthetic groups, and carriersRegulatory functions," => "Biosynthesis of cofactors, prosthetic groups, and carriersRegulatory functions,",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Riboflavin, FMN, and FAD" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Riboflavin, FMN, and FAD",
"Biosynthesis of cofactors, prosthetic groups, and carriers: Thiamine" => "Biosynthesis of cofactors, prosthetic groups, and carriers: Thiamine",
"Cell envelope" => "Cell envelope",
"Cell envelope: Biosynthesis and degradation of murein sacculus and peptidoglycan" => "Cell envelope: Biosynthesis and degradation of murein sacculus and peptidoglycan",
"Cell envelope: Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides" => "Cell envelope: Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides",
"Cell envelopeCellular processes" => "Cell envelopeCellular processes",
"Cell envelopeCellular processes," => "Cell envelopeCellular processes,",
"Cell envelopeEnergy metabolism," => "Cell envelopeEnergy metabolism,",
"Cell envelopeFatty acid and phospholipid metabolism," => "Cell envelopeFatty acid and phospholipid metabolism,",
"Cell envelopeMobile and extrachromosomal element functions" => "Cell envelopeMobile and extrachromosomal element functions",
"Cell envelopeMobile and extrachromosomal element functions," => "Cell envelopeMobile and extrachromosomal element functions,",
"Cell envelope: Other" => "Cell envelope: Other",
"Cell envelopeProtein fate" => "Cell envelopeProtein fate",
"Cell envelopeProtein fate," => "Cell envelopeProtein fate,",
"Cell envelopeRegulatory functions,Unknown function" => "Cell envelopeRegulatory functions,Unknown function",
"Cell envelopeRegulatory functions,Unknown function," => "Cell envelopeRegulatory functions,Unknown function,",
"Cell envelope: Surface structures" => "Cell envelope: Surface structures",
"Cell envelopeTransport and binding proteins," => "Cell envelopeTransport and binding proteins,",
"Cell envelopeTransport and binding proteins,Cellular processes," => "Cell envelopeTransport and binding proteins,Cellular processes,",
"Cell envelopeUnclassified," => "Cell envelopeUnclassified,",
"Cell envelopeUnknown function" => "Cell envelopeUnknown function",
"Cell envelopeUnknown function," => "Cell envelopeUnknown function,",
"Cellular processes" => "Cellular processes",
"Cellular processes: Adaptations to atypical conditions" => "Cellular processes: Adaptations to atypical conditions",
"Cellular processes: Cell adhesion" => "Cellular processes: Cell adhesion",
"Cellular processes: Cell division" => "Cellular processes: Cell division",
"Cellular processesCentral intermediary metabolism,Signal transduction," => "Cellular processesCentral intermediary metabolism,Signal transduction,",
"Cellular processes: Chemotaxis and motility" => "Cellular processes: Chemotaxis and motility",
"Cellular processes: Detoxification" => "Cellular processes: Detoxification",
"Cellular processes: DNA transformation" => "Cellular processes: DNA transformation",
"Cellular processesEnergy metabolism," => "Cellular processesEnergy metabolism,",
"Cellular processesEnergy metabolism,Protein fate," => "Cellular processesEnergy metabolism,Protein fate,",
"Cellular processes: Other" => "Cellular processes: Other",
"Cellular processes: Pathogenesis" => "Cellular processes: Pathogenesis",
"Cellular processesProtein synthesis" => "Cellular processesProtein synthesis",
"Cellular processesProtein synthesis," => "Cellular processesProtein synthesis,",
"Cellular processesRegulatory functions" => "Cellular processesRegulatory functions",
"Cellular processesRegulatory functions," => "Cellular processesRegulatory functions,",
"Cellular processes: Sporulation and germination" => "Cellular processes: Sporulation and germination",
"Cellular processes: Toxin production and resistance" => "Cellular processes: Toxin production and resistance",
"Cellular processesTranscription" => "Cellular processesTranscription",
"Cellular processesTranscription," => "Cellular processesTranscription,",
"Cellular processesTransport and binding proteins" => "Cellular processesTransport and binding proteins",
"Cellular processesTransport and binding proteins," => "Cellular processesTransport and binding proteins,",
"Central intermediary metabolism" => "Central intermediary metabolism",
"Central intermediary metabolism: Amino sugars" => "Central intermediary metabolism: Amino sugars",
"Central intermediary metabolismEnergy metabolism," => "Central intermediary metabolismEnergy metabolism,",
"Central intermediary metabolismEnergy metabolism,Fatty acid and phospholipid metabolism," => "Central intermediary metabolismEnergy metabolism,Fatty acid and phospholipid metabolism,",
"Central intermediary metabolismEnergy metabolism,Unknown function," => "Central intermediary metabolismEnergy metabolism,Unknown function,",
"Central intermediary metabolism: Nitrogen metabolism" => "Central intermediary metabolism: Nitrogen metabolism",
"Central intermediary metabolism: Other" => "Central intermediary metabolism: Other",
"Central intermediary metabolismProtein fate," => "Central intermediary metabolismProtein fate,",
"Central intermediary metabolismPurines, pyrimidines, nucleosides, and nucleotides," => "Central intermediary metabolismPurines, pyrimidines, nucleosides, and nucleotides,",
"Central intermediary metabolismUnknown function" => "Central intermediary metabolismUnknown function",
"Central intermediary metabolismUnknown function," => "Central intermediary metabolismUnknown function,",
"Chr." => "Chr.",
"conserved hypothetical proteins" => "conserved hypothetical proteins",
"Conserved Hypothetical proteins" => "Conserved Hypothetical proteins",
"Disrupted reading frame" => "Disrupted reading frame",
"DNA metabolism" => "DNA metabolism",
"DNA metabolism: Degradation of DNA" => "DNA metabolism: Degradation of DNA",
"DNA metabolism: DNA replication, recombination, and repair" => "DNA metabolism: DNA replication, recombination, and repair",
"DNA metabolismMobile and extrachromosomal element functions," => "DNA metabolismMobile and extrachromosomal element functions,",
"DNA metabolismTranscription," => "DNA metabolismTranscription,",
"Energy metabolism" => "Energy metabolism",
"Energy metabolism: ATP-proton motive force interconversion" => "Energy metabolism: ATP-proton motive force interconversion",
"Energy metabolism: Biosynthesis and degradation of polysaccharides" => "Energy metabolism: Biosynthesis and degradation of polysaccharides",
"Energy metabolism: Electron transport" => "Energy metabolism: Electron transport",
"Energy metabolismFatty acid and phospholipid metabolism" => "Energy metabolismFatty acid and phospholipid metabolism",
"Energy metabolismFatty acid and phospholipid metabolism," => "Energy metabolismFatty acid and phospholipid metabolism,",
"Energy metabolism: Fermentation" => "Energy metabolism: Fermentation",
"Energy metabolism: Glycolysis/gluconeogenesis" => "Energy metabolism: Glycolysis/gluconeogenesis",
"Energy metabolismPurines, pyrimidines, nucleosides, and nucleotides," => "Energy metabolismPurines, pyrimidines, nucleosides, and nucleotides,",
"Energy metabolismRegulatory functions,Protein synthesis" => "Energy metabolismRegulatory functions,Protein synthesis",
"Energy metabolismRegulatory functions,Protein synthesis," => "Energy metabolismRegulatory functions,Protein synthesis,",
"Energy metabolism: Sugars" => "Energy metabolism: Sugars",
"Energy metabolism: TCA cycle" => "Energy metabolism: TCA cycle",
"Energy metabolismTransport and binding proteins," => "Energy metabolismTransport and binding proteins,",
"Energy metabolismTransport and binding proteins,Central intermediary metabolism," => "Energy metabolismTransport and binding proteins,Central intermediary metabolism,",
"Energy metabolismUnknown function," => "Energy metabolismUnknown function,",
"Entry and Cell-Cell Fusion" => "Entry and Cell-Cell Fusion",
"Fatty acid and phospholipid metabolism" => "Fatty acid and phospholipid metabolism",
"Fatty acid and phospholipid metabolism: Biosynthesis" => "Fatty acid and phospholipid metabolism: Biosynthesis",
"Fatty acid and phospholipid metabolism: Degradation" => "Fatty acid and phospholipid metabolism: Degradation",
"host defense modulator" => "host defense modulator",
"host-range" => "host-range",
"host-range, binds EGF receptor" => "host-range, binds EGF receptor",
"host-range determinant, host defense modulator" => "host-range determinant, host defense modulator",
"host range factor" => "host range factor",
"host range factor, host defense modulator" => "host range factor, host defense modulator",
"host range, host defense modulator, prevents syncytia" => "host range, host defense modulator, prevents syncytia",
"host-range, possible host defense modulator" => "host-range, possible host defense modulator",
"host range protein" => "host range protein",
"Hypothetical proteins" => "Hypothetical proteins",
"Hypothetical proteins: Conserved" => "Hypothetical proteins: Conserved",
"Hypothetical proteins: Domain" => "Hypothetical proteins: Domain",
"in virion, inactive" => "in virion, inactive",
"Mobile and extrachromosomal element functions" => "Mobile and extrachromosomal element functions",
"Mobile and extrachromosomal element functions: Other" => "Mobile and extrachromosomal element functions: Other",
"Mobile and extrachromosomal element functions: Plasmid functions" => "Mobile and extrachromosomal element functions: Plasmid functions",
"Mobile and extrachromosomal element functions: Prophage functions" => "Mobile and extrachromosomal element functions: Prophage functions",
"#N/A" => "#N/A",
"N/A" => "N/A",
"No Data" => "No Data",
"Protein fate" => "Protein fate",
"Protein fateCellular processes," => "Protein fateCellular processes,",
"Protein fate: Degradation of proteins, peptides, and glycopeptides" => "Protein fate: Degradation of proteins, peptides, and glycopeptides",
"Protein fateEnergy metabolism,DNA metabolism," => "Protein fateEnergy metabolism,DNA metabolism,",
"Protein fate: Protein and peptide secretion and trafficking" => "Protein fate: Protein and peptide secretion and trafficking",
"Protein fate: Protein folding and stabilization" => "Protein fate: Protein folding and stabilization",
"Protein fate: Protein modification and repair" => "Protein fate: Protein modification and repair",
"Protein fateRegulatory functions" => "Protein fateRegulatory functions",
"Protein fateRegulatory functions," => "Protein fateRegulatory functions,",
"Protein synthesis" => "Protein synthesis",
"Protein synthesis: Ribosomal proteins: synthesis and modification" => "Protein synthesis: Ribosomal proteins: synthesis and modification",
"Protein synthesis: tRNA aminoacylation" => "Protein synthesis: tRNA aminoacylation",
"Protein synthesis: tRNA and rRNA base modification" => "Protein synthesis: tRNA and rRNA base modification",
"Purines, pyrimidines, nucleosides, and nucleotides" => "Purines, pyrimidines, nucleosides, and nucleotides",
"Purines, pyrimidines, nucleosides, and nucleotidesEnergy metabolism," => "Purines, pyrimidines, nucleosides, and nucleotidesEnergy metabolism,",
"Purines, pyrimidines, nucleosides, and nucleotides: Nucleotide and nucleoside interconversions" => "Purines, pyrimidines, nucleosides, and nucleotides: Nucleotide and nucleoside interconversions",
"Purines, pyrimidines, nucleosides, and nucleotides: Other" => "Purines, pyrimidines, nucleosides, and nucleotides: Other",
"Purines, pyrimidines, nucleosides, and nucleotidesProtein synthesis," => "Purines, pyrimidines, nucleosides, and nucleotidesProtein synthesis,",
"Purines, pyrimidines, nucleosides, and nucleotides: Pyrimidine ribonucleotide biosynthesis" => "Purines, pyrimidines, nucleosides, and nucleotides: Pyrimidine ribonucleotide biosynthesis",
"Purines, pyrimidines, nucleosides, and nucleotides: Salvage of nucleosides and nucleotides" => "Purines, pyrimidines, nucleosides, and nucleotides: Salvage of nucleosides and nucleotides",
"Purines, pyrimidines, nucleosides, and nucleotides: Sugar-nucleotide biosynthesis and conversions" => "Purines, pyrimidines, nucleosides, and nucleotides: Sugar-nucleotide biosynthesis and conversions",
"Purines, pyrimidines, nucleosides, and nucleotidesTransport and binding proteins," => "Purines, pyrimidines, nucleosides, and nucleotidesTransport and binding proteins,",
"Regulatory functions" => "Regulatory functions",
"Regulatory functionsAmino acid biosynthesis" => "Regulatory functionsAmino acid biosynthesis",
"Regulatory functionsAmino acid biosynthesis," => "Regulatory functionsAmino acid biosynthesis,",
"Regulatory functions: DNA interactions" => "Regulatory functions: DNA interactions",
"Regulatory functionsDNA metabolism," => "Regulatory functionsDNA metabolism,",
"Regulatory functions: Other" => "Regulatory functions: Other",
"Regulatory functions: RNA interactions" => "Regulatory functions: RNA interactions",
"Regulatory functionsSignal transduction" => "Regulatory functionsSignal transduction",
"Regulatory functionsSignal transduction," => "Regulatory functionsSignal transduction,",
"Regulatory functionsTransport and binding proteins," => "Regulatory functionsTransport and binding proteins,",
"Signal transduction" => "Signal transduction",
"Signal transduction: PTS" => "Signal transduction: PTS",
"S-S bond formation pathway" => "S-S bond formation pathway",
"Transcription" => "Transcription",
"Transcription: Degradation of RNA" => "Transcription: Degradation of RNA",
"TranscriptionUnknown function," => "TranscriptionUnknown function,",
"Transport and binding proteins" => "Transport and binding proteins",
"Transport and binding proteins: Amino acids, peptides and amines" => "Transport and binding proteins: Amino acids, peptides and amines",
"Transport and binding proteins: Anions" => "Transport and binding proteins: Anions",
"Transport and binding proteinsBiosynthesis of cofactors, prosthetic groups, and carriers," => "Transport and binding proteinsBiosynthesis of cofactors, prosthetic groups, and carriers,",
"Transport and binding proteins: Carbohydrates, organic alcohols, and acids" => "Transport and binding proteins: Carbohydrates, organic alcohols, and acids",
"Transport and binding proteins: Cations and iron carrying compounds" => "Transport and binding proteins: Cations and iron carrying compounds",
"Transport and binding proteins: Nucleosides, purines and pyrimidines" => "Transport and binding proteins: Nucleosides, purines and pyrimidines",
"Transport and binding proteins: Other" => "Transport and binding proteins: Other",
"Transport and binding proteins: Unknown substrate" => "Transport and binding proteins: Unknown substrate",
"Unclassified" => "Unclassified",
"Unclassified: Role category not yet assigned" => "Unclassified: Role category not yet assigned",
"unknown" => "unknown",
"unknown, conserved protein" => "unknown, conserved protein",
"Unknown function" => "Unknown function",
"Unknown function: Enzymes of unknown specificity" => "Unknown function: Enzymes of unknown specificity",
"Unknown function: General" => "Unknown function: General",
"Viral functions" => "Viral functions",
"Viral functions: General" => "Viral functions: General"
)
$organisms = array(
"Acinetobacter baumannii",
"Acinetobacter baumannii AB0057",
"Acinetobacter baumannii ATCC 17978",
"Acinetobacter baumannii SDF",
"Acinetobacter haemolyticus",
"Acinetobacter sp. ATCC 27244",
"Actinobacillus pleuropneumoniae serovar 5b str. L20",
"Agrobacterium tumefaciens str. C58",
"Aquifex aeolicus VF5",
"Aspergillus fumigatus A1163",
"Bacillus anthracis str. Ames",
"Bacillus anthracis str. 'Ames Ancestor'",
"Bacillus anthracis str. Sterne",
"Bacillus subtilis",
"Bacillus subtilis subsp. subtilis str. 168",
"Bacteroides thetaiotaomicron VPI-5482",
"Bifidobacterium longum subsp. infantis ATCC 15697",
"Bordetella bronchiseptica RB50",
"Bordetella pertussis Tohama I",
"Borrelia burgdorferi B31",
"Burkholderia mallei ATCC 23344",
"Burkholderia pseudomallei K96243",
"Burkholderia pseudomallei MSHR346",
"Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819",
"Cell fusing agent virus",
"Chlamydia muridarum Nigg",
"Chlamydia trachomatis",
"Chlamydia trachomatis D/UW-3/CX",
"Clostridium difficile 630",
"Clostridium perfringens ATCC 13124",
"Clostridium perfringens str. 13",
"Cowpox virus",
"Cowpox virus (Brighton Red)",
"Coxiella burnetii RSA 493",
"Coxsackievirus B3 (strain Woodruff)",
"Cryptosporidium parvum",
"Dengue virus 1",
"Dengue virus 2",
"Dengue virus 3",
"Dengue virus 4",
"Ectromelia virus",
"Enterobacter cloacae",
"Enterococcus faecalis",
"Enterococcus faecalis V583",
"Enterococcus faecium",
"Enterococcus faecium DO",
"Enterococcus gallinarum",
"Escherichia coli",
"Escherichia coli 042",
"Escherichia coli CFT073",
"Escherichia coli ETEC H10407",
"Escherichia coli K-12",
"Escherichia coli O103:H2 str. 12009",
"Escherichia coli O157:H7 str. EDL933",
"Escherichia coli O157:H7 str. Sakai",
"Escherichia coli str. K-12 substr. MG1655",
"Escherichia coli UTI89",
"Francisella novicida U112",
"Francisella tularensis subsp. holarctica LVS",
"Francisella tularensis subsp. tularensis SCHU S4",
"Haemophilus influenzae PittII",
"Helicobacter pylori",
"Helicobacter pylori 26695",
"Helicobacter pylori J99",
"Herpesvirus saimiri (strain 488)",
"Homo sapiens",
"Human echovirus 7",
"Human herpesvirus 6",
"Human herpesvirus 8",
"Human herpesvirus 8 type M",
"Influenza A virus (A/Aichi/2/1968(H3N2))",
"Influenza A virus (A/California/07/2009(H1N1))",
"Influenza A virus (A/Puerto Rico/8/1934(H1N1))",
"Influenza A virus (A/udorn/1972(H3N2))",
"Influenza B virus (B/Lee/40)",
"Japanese encephalitis virus",
"Legionella pneumophila 130b",
"Legionella pneumophila subsp. pneumophila str. Philadelphia 1",
"Listeria monocytogenes",
"Listeria monocytogenes EGD-e",
"Modoc virus",
"Monkeypox virus",
"Montana myotis leukoencephalitis virus",
"Murid herpesvirus 4",
"Murray Valley encephalitis virus",
"Mus musculus",
"Mycobacterium smegmatis str. MC2 155",
"Mycobacterium tuberculosis CDC1551",
"Mycobacterium tuberculosis H37Rv",
"Myxoma virus (strain Lausanne)",
"Neisseria gonorrhoeae",
"Neisseria gonorrhoeae FA 1090",
"Plasmodium falciparum 3D7",
"Plasmodium vivax",
"Plasmodium vivax SaI-1",
"Proteus mirabilis",
"Providencia stuartii",
"Pseudomonas aeruginosa",
"Pseudomonas aeruginosa PAO1",
"Pseudomonas aeruginosa UCBPP-PA14",
"Pseudomonas fluorescens Pf-5",
"Pseudomonas putida KT2440",
"Rickettsia prowazekii str. Madrid E",
"Rio Bravo virus",
"Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150",
"Salmonella enterica subsp. enterica serovar Typhimurium",
"Salmonella enterica subsp. enterica serovar Typhimurium str. LT2",
"SARS coronavirus",
"Shigella dysenteriae 1012",
"Shigella dysenteriae Sd197",
"Shigella flexneri",
"Shigella flexneri 2a str. 2457T",
"Shigella flexneri 2a str. 301",
"Staphylococcus aureus",
"Staphylococcus aureus subsp. aureus COL",
"Staphylococcus aureus subsp. aureus MRSA252",
"Staphylococcus aureus subsp. aureus Mu3",
"Staphylococcus aureus subsp. aureus Mu50",
"Staphylococcus aureus subsp. aureus N315",
"Staphylococcus aureus subsp. aureus NCTC 8325",
"Staphylococcus aureus subsp. aureus str. Newman",
"Staphylococcus aureus subsp. aureus USA300_FPR3757",
"Staphylococcus aureus subsp. aureus USA300_TCH1516",
"Staphylococcus epidermidis",
"Staphylococcus epidermidis RP62A",
"Staphylococcus haemolyticus",
"St. Louis encephalitis virus (strain MS1-7)",
"Streptococcus agalactiae",
"Streptococcus agalactiae 2603V/R",
"Streptococcus agalactiae A909",
"Streptococcus agalactiae NEM316",
"Streptococcus bovis ATCC 700338",
"Streptococcus downei F0415",
"Streptococcus dysgalactiae subsp. equisimilis",
"Streptococcus dysgalactiae subsp. equisimilis GGS_124",
"Streptococcus equinus ATCC 9812",
"Streptococcus equi subsp. zooepidemicus",
"Streptococcus equi subsp. zooepidemicus MGCS10565",
"Streptococcus gallolyticus UCN34",
"Streptococcus infantarius subsp. infantarius ATCC BAA-102",
"Streptococcus mutans UA159",
"Streptococcus parauberis KCTC 11537",
"Streptococcus phage SM1",
"Streptococcus pneumoniae",
"Streptococcus pneumoniae G54",
"Streptococcus pneumoniae Hungary19A-6",
"Streptococcus pneumoniae P1031",
"Streptococcus pneumoniae R6",
"Streptococcus pneumoniae str. Canada MDR_19A",
"Streptococcus pneumoniae str. Canada MDR_19F",
"Streptococcus pneumoniae TCH8431/19A",
"Streptococcus pneumoniae TIGR4",
"Streptococcus porcinus str. Jelinkova 176",
"Streptococcus pyogenes",
"Streptococcus pyogenes M1 GAS",
"Streptococcus pyogenes MGAS5005",
"Streptococcus pyogenes NZ131",
"Streptococcus pyogenes str. Manfredo",
"Streptococcus sp. 'group G'",
"Streptococcus suis P1/7",
"Streptococcus suis SC84",
"Streptococcus thermophilus LMD-9",
"Streptococcus thermophilus LMG 18311",
"Streptococcus uberis 0140J",
"Streptomyces fradiae",
"Streptomyces griseus",
"Streptomyces toyocaensis",
"synthetic construct",
"Toxoplasma gondii",
"Toxoplasma gondii GT1",
"Toxoplasma gondii ME49",
"Treponema pallidum subsp. pallidum str. Nichols",
"Vaccinia virus",
"Vaccinia virus Copenhagen",
"Vaccinia virus L-IPV",
"Vaccinia virus WR",
"Vibrio cholerae",
"Vibrio cholerae O1 biovar El Tor str. N16961",
"Vibrio cholerae O395",
"Vibrio fischeri ES114",
"Vibrio mimicus",
"Vibrio parahaemolyticus",
"Vibrio parahaemolyticus RIMD 2210633",
"Vibrio sp. AND4",
"Vibrio vulnificus CMCP6",
"Western equine encephalomyelitis virus",
"West Nile virus",
"Yellow fever virus",
"Yersinia pestis CO92",
"Yersinia pestis KIM10+",
"Yersinia pseudotuberculosis IP 32953",
"Zaire ebolavirus"
)
$species = array(
"Acinetobacter baumannii",
"Acinetobacter haemolyticus",
"Acinetobacter sp. ATCC 27244",
"Actinobacillus pleuropneumoniae",
"Agrobacterium tumefaciens",
"Aliivibrio fischeri",
"Aquifex aeolicus",
"Aspergillus fumigatus",
"Bacillus anthracis",
"Bacillus subtilis",
"Bacteroides thetaiotaomicron",
"Bifidobacterium longum",
"Bordetella bronchiseptica",
"Bordetella pertussis",
"Borrelia burgdorferi",
"Burkholderia mallei",
"Burkholderia pseudomallei",
"Campylobacter jejuni",
"Cell fusing agent virus",
"Chlamydia muridarum",
"Chlamydia trachomatis",
"[Clostridium] difficile",
"Clostridium perfringens",
"Cowpox virus",
"Coxiella burnetii",
"Cryptosporidium parvum",
"Dengue virus",
"Ectromelia virus",
"Enterobacter cloacae",
"Enterococcus faecalis",
"Enterococcus faecium",
"Enterococcus gallinarum",
"Escherichia coli",
"Francisella novicida",
"Francisella tularensis",
"Haemophilus influenzae",
"Helicobacter pylori",
"Homo sapiens",
"Human enterovirus B",
"Human herpesvirus 6",
"Human herpesvirus 8",
"Influenza A virus",
"Influenza B virus",
"Japanese encephalitis virus",
"Legionella pneumophila",
"Listeria monocytogenes",
"Modoc virus",
"Monkeypox virus",
"Montana myotis leukoencephalitis virus",
"Murid herpesvirus 4",
"Murray Valley encephalitis virus",
"Mus musculus",
"Mycobacterium smegmatis",
"Mycobacterium tuberculosis",
"Myxoma virus",
"Neisseria gonorrhoeae",
"Plasmodium falciparum",
"Plasmodium vivax",
"Proteus mirabilis",
"Providencia stuartii",
"Pseudomonas aeruginosa",
"Pseudomonas fluorescens",
"Pseudomonas putida",
"Rickettsia prowazekii",
"Rio Bravo virus",
"Saimiriine herpesvirus 2",
"Salmonella enterica",
"Severe acute respiratory syndrome-related coronavirus",
"Shigella dysenteriae",
"Shigella flexneri",
"Staphylococcus aureus",
"Staphylococcus epidermidis",
"Staphylococcus haemolyticus",
"St. Louis encephalitis virus",
"Streptococcus agalactiae",
"Streptococcus downei",
"Streptococcus dysgalactiae",
"Streptococcus equi",
"Streptococcus equinus",
"Streptococcus gallolyticus",
"Streptococcus infantarius",
"Streptococcus mutans",
"Streptococcus parauberis",
"Streptococcus phage SM1",
"Streptococcus pneumoniae",
"Streptococcus porcinus",
"Streptococcus pyogenes",
"Streptococcus sp. 'group G'",
"Streptococcus suis",
"Streptococcus thermophilus",
"Streptococcus uberis",
"Streptomyces fradiae",
"Streptomyces griseus",
"Streptomyces toyocaensis",
"synthetic construct",
"Toxoplasma gondii",
"Treponema pallidum",
"Vaccinia virus",
"Vibrio cholerae",
"Vibrio mimicus",
"Vibrio parahaemolyticus",
"Vibrio sp. AND4",
"Vibrio vulnificus",
"Western equine encephalomyelitis virus",
"West Nile virus",
"Yellow fever virus",
"Yersinia pestis",
"Yersinia pseudotuberculosis",
"Zaire ebolavirus"
)
$priority = array(
"0",
"1",
"6",
"8"
)
$stage = array(
"cloned" => "cloned",
"crystallized" => "crystallized",
"crystal_structure" => "crystal_structure",
"diffraction" => "diffraction",
"expressed" => "expressed",
"expression_tested" => "expression_tested",
"in_crystallization_trials" => "in_crystallization_trials",
"in_pdb" => "in_pdb",
"purified" => "purified",
"selected" => "selected",
"soluble" => "soluble",
"work_stopped" => "work_stopped"
)
$screening_options = array(
"Yes",
"No"
)
$ligand_studies = array(
"Yes",
"No"
)
$functional_follow_up = array(
"Yes",
"No"
)
$clone_location = array(
"ANL" => "Argonne National Laboratory",
"COLLABORATORS" => "Collaborators of the CSGID",
"JCVI" => "J. Craig Venter Institute",
"NU" => "Northwestern University",
"UT" => "University of Toronto",
"UTSW" => "University of Texas Southwestern Medical Center",
"UVA" => "University of Virginia",
"WU" => "Washington University"
)
$requesters = null
$options = array()
$colors = array(
"work_stopped" => "#FFFFFF",
"selected" => "#F0F0F0",
"cloned" => "#E0E0E0",
"expressed" => "#D0D0D0",
"soluble" => "#C0C0C0",
"purified" => "#B0B0B0",
"in_crystallization_trials" => "#B0B0B0",
"crystallized" => "#E0C0C0",
"diffraction" => "#F0C0C0",
"crystal_structure" => "#FFC0C0",
"in_pdb" => "#FFC0C0"
)
$targets = array(
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
array(),
"TigrMainRole" => array(),
"TigrSubRole" => array(),
"Organism" => array(),
"ProteinPdbHomolog" => array(),
"SubTarget" => array(),
"ProteinClone" => array(),
"Purification" => array(),
"Expression" => array(),
"Deposit" => array(),
"Dataset" => array(),
"Screening" => array(),
"CrystalHarvest" => array(),
"Justification" => array()
),
array(
"Target" => array(),
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$rand = 1403837555include - APP/views/targets/index.ctp, line 294
View::_render() - CORE/cake/libs/view/view.php, line 723
View::render() - CORE/cake/libs/view/view.php, line 419
Controller::render() - CORE/cake/libs/controller/controller.php, line 911
Dispatcher::_invoke() - CORE/cake/dispatcher.php, line 207
Dispatcher::dispatch() - CORE/cake/dispatcher.php, line 171
[main] - APP/webroot/index.php, line 85 |