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Structure of IDP01486

Crystal structure of 3-keto-L-gulonate-6-phosphate decarboxylase from Vibrio cholerae O1 biovar El Tor str. N16961

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CSGID target
IDP01486 
PDB Id
3IEB (NCBI MMDB) 
Authors
B.Nocek,N.Maltseva,J.Osipiuk,J.Stam,W.Anderson,A.Joachimiak 
Responsible person
Boguslaw Nocek 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jul 22, 2009 
Release Date
Aug 18, 2009 

Annotation

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    SO4 sulfate ion crystallization
    GOL glycerol crystallization
    MSE selenomethionine modified residue

    Structure information

    View structure information | Edit structure information (upload a PDB file)

    Unit cell parameters

    Space Group
    P 61 2 2  
    Unit Cell

    a=157.40Å, b=157.40Å, c=303.39Å
    α=90.00, β=90.00, γ=120.00  
    Solvent content
    72.99  
    Matthews coefficient
    4.55  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    40.00-2.10Å (2.15-2.10Å)  
    Rall(%)
    18.0  
    Rwork(%)
    17.8 (23.8)  
    Rfree(%)
    20.8 (28.3)  
    Num. observed reflections
    128158 (9346)  
    Num. Rfree reflections
    6407 (532)  
    Completeness(%)
    99.3 (99.9)  

    Model parameters

    Num Atoms
    7840  
    Num Waters
    727  
    Num Hetatoms
    1130  
    Model mean isotropic B factor (Å2)
    15.050  
    RMSD bond length (Å)
    0.020  
    RMSD bond angle
    1.609°  
    Filename uploaded
    rcsb054304.pdb (uploaded on Aug 07, 2009 5:24 PM)  
    Inserted
    Aug 07, 2009