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Structure of IDP00347

Crystal structure of glutamate racemase from Listeria monocytogenes in complex with acetate ion

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CSGID target
IDP00347 
PDB Id
3ISV (NCBI MMDB) 
Authors
K.A.Majorek,M.Chruszcz,T.Skarina,O.Onopriyenko,J.Stam,W.F.Anderson,A.Savchenko,J.M.Bujnicki,W.Minor,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Karolina Majorek 
Responsible lab
University of Virginia 
Deposition Date
Aug 27, 2009 
Release Date
Sep 22, 2009 

Annotation

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • ConSurf
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    ACT acetate ion
    CA calcium ion
    CL chloride ion
    MSE selenomethionine modified residue

    Structure information

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    Unit cell parameters

    Space Group
    P 43 21 2  
    Unit Cell

    a=66.76Å, b=66.76Å, c=258.60Å
    α=90.00, β=90.00, γ=90.00  
    Solvent content
    49.13  
    Matthews coefficient
    2.42  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    50.00-1.85Å (1.90-1.85Å)  
    Rall(%)
    17.4  
    Rwork(%)
    17.2 (25.0)  
    Rfree(%)
    22.3 (34.5)  
    Num. observed reflections
    50956 (3671)  
    Num. Rfree reflections
    2598 (196)  
    Completeness(%)
    99.5 (99.8)  

    Model parameters

    Num Atoms
    4558  
    Num Waters
    423  
    Num Hetatoms
    0  
    Model mean isotropic B factor (Å2)
    12.270  
    RMSD bond length (Å)
    0.018  
    RMSD bond angle
    1.633°  
    Filename uploaded
    hkl_refine_25w2.pdb (uploaded on Aug 27, 2009 2:33 PM)  
    Inserted
    Aug 27, 2009