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Structure of IDP02458

Structure of the YPO2259 putative oxidoreductase from Yersinia pestis

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CSGID target
IDP02458 
PDB Id
3KUX (NCBI MMDB) 
Authors
S.M.Anderson,Z.Wawrzak,E.Gordon,K.Kwon,A.Edwards,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases 
Responsible person
Spencer Anderson 
Responsible lab
Northwestern University 
Deposition Date
Nov 28, 2009 
Release Date
Dec 22, 2009 

Annotation

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    CL chloride ion
    MSE selenomethionine modified residue

    Structure information

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    Unit cell parameters

    Space Group
    P 65 2 2  
    Unit Cell

    a=97.55Å, b=97.55Å, c=172.51Å
    α=90.00, β=90.00, γ=120.00  
    Solvent content
    59.8  
    Matthews coefficient
    3.06  

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    46.93-2.75Å (2.82-2.75Å)  
    Rall(%)
    20.1  
    Rwork(%)
    19.9 (30.9)  
    Rfree(%)
    24.5 (36.0)  
    Num. observed reflections
    13251 (945)  
    Num. Rfree reflections
    662 (42)  
    Completeness(%)
    99.5 (99.3)  

    Model parameters

    Num Atoms
    2750  
    Num Waters
    44  
    Num Hetatoms
    0  
    Model mean isotropic B factor (Å2)
    22.950  
    RMSD bond length (Å)
    0.004  
    RMSD bond angle
    0.796°  
    Filename uploaded
    idp2458_SSS.pdb (uploaded on Nov 28, 2009 2:39 PM)  
    Inserted
    Nov 28, 2009