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Structure of IDP01048

Structure of the YghA Oxidoreductase from Salmonella enterica

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CSGID target
IDP01048 
PDB Id
3R3S (NCBI MMDB) 
Authors
S.M.Anderson,Z.Wawrzak,O.Onopriyenko,S.N.Peterson,W.F.Anderson,A.Savchenko,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Spencer Anderson 
Responsible lab
Northwestern University 
Deposition Date
Mar 16, 2011 
Release Date
Mar 30, 2011 

Annotation

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Slides:
  • Asymmetric unit
  • Biological unit
  • B-factors distribution
  • B-factors distribution on the surface
  • Homolog superposition
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    secondary structure, N to C, molecule

    Ligands

    Ligand code Name Ligand type
    MG magnesium ion biological
    FMT formic acid
    NAD nicotinamide adenine dinucleotide biological
    SO4 sulfate ion crystallization

    Structure information

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    Unit cell parameters

    Space Group
    P 1 21 1  
    Unit Cell

    a=75.73Å, b=80.67Å, c=96.17Å
    α=90.00, β=100.96, γ=90.00  
    Solvent content
     
    Matthews coefficient
     

    Refinement

    Data for the highest resolution shell is in parentheses.
    Resolution range
    27.34-1.25Å (1.29-1.25Å)  
    Rall(%)
    13.0  
    Rwork(%)
    12.9 (22.6)  
    Rfree(%)
    15.3 (25.8)  
    Num. observed reflections
    311679 (29155)  
    Num. Rfree reflections
    15583 (1458)  
    Completeness(%)
    99.0 (92.9)  

    Model parameters

    Num Atoms
    9005  
    Num Waters
    1943  
    Num Hetatoms
    2184  
    Model mean isotropic B factor (Å2)
    11.780  
    RMSD bond length (Å)
    0.012  
    RMSD bond angle
    1.546°  
    RMSD dihedral angle
    15.396°
     
    Filename uploaded
    rcsb064452.pdb (uploaded on Mar 21, 2011 3:38 PM)  
    Inserted
    Mar 21, 2011