Structure of IDP92102

Crystal structure of a putative ornithine aminotransferase from Toxoplasma gondii ME49 in complex with pyrodoxal-5-phosphate

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CSGID target
IDP92102 
PDB Id
4NOG (NCBI MMDB) 
Authors
E.V.Filippova,A.Halavaty,J.Ruan,L.Shuvalova,K.Flores,I.Dubrovska,H.Ngo,D.Shanmugam,D.Roos,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Ekaterina Filippova 
Responsible lab
Northwestern University 
Deposition Date
Nov 19, 2013 
Release Date
Dec 04, 2013 

Annotation

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Ligands

Ligand code Name Ligand type
BME beta mercaptoethanol crystallization
ACT crystallization
BTB 2-[bis-(2-hydroxy-ethyl)-amino]-2-hydroxymethyl-propane-1,3-diol crystallization
PEG crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on biological

Structure information

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Unit cell parameters

Space Group
P 1  
Unit Cell

a=56.19Å, b=61.33Å, c=63.68Å
α=100.58, β=93.23, γ=107.74 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
62.14-1.20Å (1.23-1.20Å)  
Rall(%)
13.5 
Rwork(%)
13.3 (20.9) 
Rfree(%)
16.5 (23.8) 
Num. observed reflections
224565 (16427) 
Num. Rfree reflections
11228 (889) 
Completeness(%)
90.8 (90.0) 

Model parameters

Num Atoms
6785  
Num Waters
1041  
Num Hetatoms
1112  
Model mean isotropic B factor
18.360Å2  
RMSD bond length
0.021Å  
RMSD bond angle
1.927°  
Filename uploaded
rcsb083457.pdb (uploaded on Dec 03, 2013 11:25 AM)  
Inserted
Dec 03, 2013