Structure of IDP95418

Crystal structure of an aminoglycoside acetyltransferase HMB0020 from an uncultured soil metagenomic sample in complex with trehalose

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CSGID target
IDP95418 
PDB Id
5F47 (NCBI MMDB) 
Authors
'Z.Xu,T.Skarina,Z.Wawrzak,P.J.Stogios,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Dec 03, 2015 
Release Date
Dec 30, 2015 

Annotation

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Ligands

Ligand code Name Ligand type
CA calcium ion crystallization
CL chloride crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
C 1 2 1  
Unit Cell

a=140.00Å, b=53.95Å, c=46.02Å
α=90.00, β=105.19, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
26.98-1.50Å (1.53-1.50Å)  
Rall(%)
15.7 
Rwork(%)
15.6 (22.8) 
Rfree(%)
17.8 (24.0) 
Num. observed reflections
53547 (3255) 
Num. Rfree reflections
2077 (132) 
Completeness(%)
96.4 (89.0) 

Model parameters

Num Atoms
2569  
Num Waters
676  
Num Hetatoms
728  
Model mean isotropic B factor
28.290Å2  
RMSD bond length
0.008Å  
RMSD bond angle
1.139°  
RMSD dihedral angle
14.157°
 
Filename uploaded
5F47.pdb (uploaded on Jan 06, 2016 1:31 PM)  
Inserted
Dec 04, 2015