Structure of IDP95418

Crystal structure of an aminoglycoside acetyltransferase HMB0020 from an uncultured soil metagenomic sample in complex with malonyl-coenzyme A

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CSGID target
IDP95418 
PDB Id
5F49 (NCBI MMDB) 
Authors
'Z.Xu,T.Skarina,P.J.Stogios,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Dec 03, 2015 
Release Date
Dec 16, 2015 

Annotation

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Ligands

Ligand code Name Ligand type
MLC crystallization
MG magnesium biological
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
P 1  
Unit Cell

a=46.16Å, b=54.05Å, c=84.85Å
α=72.30, β=74.57, γ=88.07 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
23.49-2.15Å (2.20-2.15Å)  
Rall(%)
19.4 
Rwork(%)
19.2 (27.1) 
Rfree(%)
22.7 (28.0) 
Num. observed reflections
41128 (2550) 
Num. Rfree reflections
2056 (131) 
Completeness(%)
95.4 (91.0) 

Model parameters

Num Atoms
5000  
Num Waters
410  
Num Hetatoms
639  
Model mean isotropic B factor
40.970Å2  
RMSD bond length
0.008Å  
RMSD bond angle
1.929°  
RMSD dihedral angle
16.106°
 
Filename uploaded
5F49.pdb (uploaded on Jan 06, 2016 1:35 PM)  
Inserted
Dec 04, 2015