Structure of IDP90513

High resolution structure of 3-hydroxydecanoyl-(acyl carrier protein) dehydratase from Yersinia pestis at 1.35 A

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CSGID target
IDP90513 
PDB Id
5HD6 (NCBI MMDB) 
Authors
C.Chang,N.Maltseva,Y.Kim,R.Mulligan,K.Kwon,W.F.Anderson,A.Joachimiak,Center For Structural Genomics Of Infectious Diseases (Csgid) 
Responsible person
Natalia Maltseva 
Responsible lab
Argonne National Laboratory 
Deposition Date
Jan 04, 2016 
Release Date
Jan 20, 2016 

Annotation

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Ligands

Ligand code Name Ligand type
GOL glycerol crystallization
175 3,5-dihydro-5-methylidene-4h-imidazol-4-on

Structure information

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Unit cell parameters

Space Group
P 1  
Unit Cell

a=42.66Å, b=50.82Å, c=138.78Å
α=90.02, β=90.02, γ=90.10 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
26.92-1.35Å (1.37-1.35Å)  
Rall(%)
13.8 
Rwork(%)
13.6 (2008.0) 
Rfree(%)
17.0 (2581.0) 
Num. observed reflections
263480 (9432) 
Num. Rfree reflections
12857 (473) 
Completeness(%)
86.3 (55.0) 

Model parameters

Num Atoms
10398  
Num Waters
1634  
Num Hetatoms
2378  
Model mean isotropic B factor
14.700Å2  
RMSD bond length
0.007Å  
RMSD bond angle
0.877°  
RMSD dihedral angle
19.619°
 
Filename uploaded
D_1000216593_model-annotate_P1.pdb (uploaded on Jan 29, 2016 12:06 PM)  
Inserted
Jan 29, 2016