Coverage of Infectious Pathogens*

Stages of targets according to unified status codes

Classification Genus Species # of structures in PDB at CSGID start # of structures in PDB # of CSGID structures CSGID as % of all entries CSGID as % of new entries
* "Number of Structures in PDB at CSGID start" denotes number of protein structures for a given species deposited in the PDB before October 1, 2007. "Current number of structures in PDB" denotes the number of structures deposited in the PDB as of November 21, 2017. For both PDB and CSGID only the structures released as of November 21, 2017 are taken into account (thus structures that have been deposited but are not yet released by the PDB are omitted). Assignment of species for PDB structures is based on taxonomy id and scientific name provided by depositors; the assignment may be imprecise in cases where only scientific name and no taxonomy id was given.
Actinobacteria (class) Bifidobacterium Bifidobacterium longum 8 33 1 3.0 4.0
Bacilli Bacillus Bacillus anthracis 64 305 104 34.1 43.2
Bacilli Enterococcus Enterococcus faecalis 93 201 6 3.0 5.6
Bacilli Enterococcus Enterococcus faecium 14 28 8 28.6 57.1
Bacilli Enterococcus Enterococcus gallinarum 0 6 4 66.7 66.7
Bacilli Listeria Listeria monocytogenes 37 174 48 27.6 35.0
Bacilli Staphylococcus Staphylococcus aureus 393 1095 54 4.9 7.7
Bacilli Staphylococcus Staphylococcus epidermidis 8 54 1 1.9 2.2
Bacilli Staphylococcus Staphylococcus haemolyticus 1 6 2 33.3 40.0
Bacilli Streptococcus Streptococcus agalactiae 12 49 2 4.1 5.4
Bacilli Streptococcus Streptococcus pneumoniae 131 396 21 5.3 7.9
Bacteroidia Bacteroides Bacteroides thetaiotaomicron 25 171 1 0.6 0.7
Betaproteobacteria Neisseria Neisseria meningitidis 59 188 3 1.6 2.3
Chlamydiae Chlamydia Chlamydia trachomatis 6 43 2 4.7 5.4
Clostridia Clostridium Clostridium difficile 6 106 23 21.7 23.0
Clostridia Clostridium Clostridium perfringens 31 153 9 5.9 7.4
Coccidia Cryptosporidium Cryptosporidium parvum 11 35 7 20.0 29.2
Coccodia Toxoplasma Toxoplasma gondii 39 118 19 16.1 24.1
Epsilonproteobacteria Campylobacter Campylobacter jejuni 17 144 44 30.6 34.6
Epsilonproteobacteria Helicobacter Helicobacter pylori 91 284 4 1.4 2.1
Gammaproteobacteria Acinetobacter Acinetobacter baumannii 4 90 11 12.2 12.8
Gammaproteobacteria Acinetobacter Acinetobacter haemolyticus 0 2 2 100.0 100.0
Gammaproteobacteria Coxiella Coxiella burnetii 0 59 8 13.6 13.6
Gammaproteobacteria Escherichia Escherichia coli 3430 5496 20 0.4 1.0
Gammaproteobacteria Francisella Francisella tularensis 3 74 41 55.4 57.7
Gammaproteobacteria Legionella Legionella pneumophila 9 102 4 3.9 4.3
Gammaproteobacteria Pseudomonas Pseudomonas aeruginosa 357 946 6 0.6 1.0
Gammaproteobacteria Pseudomonas Pseudomonas fluorescens 63 135 1 0.7 1.4
Gammaproteobacteria Salmonella Salmonella enterica 330 708 42 5.9 11.1
Gammaproteobacteria Shigella Shigella flexneri 23 101 4 4.0 5.1
Gammaproteobacteria Vibrio Vibrio cholerae 84 361 72 19.9 26.0
Gammaproteobacteria Vibrio Vibrio parahaemolyticus 17 58 2 3.4 4.9
Gammaproteobacteria Vibrio Vibrio vulnificus 5 41 16 39.0 44.4
Gammaproteobacteria Yersinia Yersinia enterocolitica 29 56 3 5.4 11.1
Gammaproteobacteria Yersinia Yersinia pestis 19 141 60 42.6 49.2
Mammalia Homo Homo sapiens 9409 20942 1 0.0 0.0
Spirochaetia Leptospira Leptospira interrogans 11 25 1 4.0 7.1
Viruses Ebolavirus Zaire ebolavirus 2 18 4 22.2 25.0
Viruses Flavivirus Dengue virus 27 81 5 6.2 9.3
Viruses Flavivirus Japanese encephalitis virus 2 7 1 14.3 20.0
Viruses Flavivirus West Nile virus 13 24 2 8.3 18.2
Viruses Influenzavirus A Influenza A virus 124 580 2 0.3 0.4
Viruses Japanese encephalitis virus group St. Louis encephalitis virus 0 1 1 100.0 100.0
Viruses Orthopoxvirus Cowpox virus 3 5 2 40.0 100.0
Viruses Orthopoxvirus Ectromelia virus 2 7 1 14.3 20.0
Viruses Orthopoxvirus Monkeypox virus 0 1 1 100.0 100.0