Structure of IDP95418

Crystal structure of an aminoglycoside acetyltransferase ENV0020 from an uncultured soil metagenomic sample in complex with sisomicin

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CSGID target
IDP95418 
PDB Id
5U08 (NCBI MMDB) 
Authors
'Z.Xu,T.Skarina,Z.Wawrzak,P.J.Stogios,V.Yim,A.Savchenko,W.F.Anderson,Center For Structural Genomics Of Infectious Diseases (Csgid)' 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Nov 23, 2016 
Release Date
Feb 08, 2017 

Annotation

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Ligands

Ligand code Name Ligand type
CA calcium ion crystallization
MG magnesium crystallization
ACT crystallization
SIS sisomicin biological

Structure information

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Unit cell parameters

Space Group
P 1  
Unit Cell

a=46.30Å, b=53.03Å, c=78.68Å
α=71.76, β=75.61, γ=88.69 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
19.55-1.52Å (1.56-1.52Å)  
Rall(%)
16.7 
Rwork(%)
16.6 (30.7) 
Rfree(%)
20.0 (29.2) 
Num. observed reflections
104140 (7000) 
Num. Rfree reflections
2041 (132) 
Completeness(%)
96.6 (94.0) 

Model parameters

Num Atoms
5032  
Num Waters
971  
Num Hetatoms
1136  
Model mean isotropic B factor
31.990Å2  
RMSD bond length
0.015Å  
RMSD bond angle
1.047°  
RMSD dihedral angle
23.556°
 
Filename uploaded
5u08.pdb (uploaded on Feb 08, 2017 9:17 AM)  
Inserted
Nov 23, 2016