Structure of IDP96425

Crystal structure of aminoglycoside resistance enzyme ApmA, complex with acetyl-CoA

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CSGID target
IDP96425 
PDB Id
7JM1 (NCBI MMDB) 
Authors
Stogios, P.J., Evdokimova, E., Di Leo, R., Bordeleau, E., Wright, G.D., Savchenko, A., Joachimiak, A., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
Peter Stogios 
Responsible lab
University of Calgary 
Deposition Date
Jul 30, 2020 
Release Date
 

Annotation

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Ligands

Ligand code Name Ligand type
MSE modified residue
ACO biological

Structure information

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Unit cell parameters

Space Group
P 1 21 1  
Unit Cell

a=68.21Å, b=77.23Å, c=97.44Å
α=90.00, β=102.52, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
37.84-2.31Å (2.34-2.31Å)  
Rall(%)
15.9 
Rwork(%)
15.7 (17.8) 
Rfree(%)
19.7 (24.2) 
Num. observed reflections
45894 (2221) 
Num. Rfree reflections
2170 (113) 
Completeness(%)
89.3 (70.0) 

Model parameters

Num Atoms
6397  
Num Waters
667  
Num Hetatoms
1007  
Model mean isotropic B factor
35.800Å2  
RMSD bond length
0.014Å  
RMSD bond angle
1.463°  
RMSD dihedral angle
22.369°
 
Filename uploaded
D_1000251030_model-annotate_P1.pdb (uploaded on Sep 08, 2020 7:02 PM)  
Inserted
Aug 02, 2020