Structure of IDP97674

Crystal Structure of the Succinyl-diaminopimelate Desuccinylase (DapE) from Acinetobacter baumannii in complex with Succinic Acid

(tree view)
Edit deposit information
CSGID target
IDP97674 
PDB Id
7T1Q (NCBI MMDB) 
Authors
Minasov, G., Shuvalova, L., Brunzelle, J.S., Dubrovska, I., Pshenychnyi, S., Satchell, K.J.F., Center for Structural Genomics of Infectious Diseases (CSGID) 
Responsible person
George Minasov 
Responsible lab
Northwestern University 
Deposition Date
Dec 02, 2021 
Release Date
Dec 15, 2021 

Annotation

Add an annotation

Ligands

Ligand code Name Ligand type
MSE modified residue
SIN succinic acid biological
ACT crystallization
PGE crystallization
ZN zinc biological

Structure information

View structure information | Edit structure information (upload a PDB file)

Unit cell parameters

Space Group
P 21 21 21  
Unit Cell

a=68.32Å, b=103.46Å, c=145.16Å
α=90.00, β=90.00, γ=90.00 
Solvent content
 
Matthews coefficient
 

Refinement

Data for the highest resolution shell is in parentheses.
Resolution range
29.71-2.25Å (2.31-2.25Å)  
Rall(%)
19.0 
Rwork(%)
18.8 (34.6) 
Rfree(%)
23.3 (34.3) 
Num. observed reflections
49566 (3600) 
Num. Rfree reflections
2478 (159) 
Completeness(%)
99.9 (100.0) 

Model parameters

Num Atoms
5742  
Num Waters
346  
Num Hetatoms
452  
Model mean isotropic B factor
53.820Å2  
RMSD bond length
0.004Å  
RMSD bond angle
1.352°  
Filename uploaded
7t1q.pdb (uploaded on Mar 11, 2022 2:14 PM)  
Inserted
Mar 11, 2022